JPred: a consensus secondary structure prediction server. - James A. Cuff; Michele E. Clamp; Asim S. Siddiqui; M. Finlay; Geoffrey J. Barton (Bioinform., 1998)

3Dee: a database of protein structural domains. - Asim S. Siddiqui; Uwe Dengler; Geoffrey J. Barton (Bioinform., 2001)

cis-Regulatory Element Prediction in Mammalian Genomes. - Asim S. Siddiqui; Gordon Robertson; Misha Bilenky; Tamara Astakhova; Obi L. Griffith; Maik Hassel; Keven Lin; Stephen B. Montgomery; Mehrdad Oveisi; Erin Pleasance; Neil Robertson 004; Monica C. Sleumer; et al. (CSB Workshops, 2005)

Sun Grid Engine Package for OSCAR - A Google Summer Of Code 2005 Project. - Babu Sundaram; Barbara M. Chapman; Bernard Li; Mark Mayo; Asim S. Siddiqui; Steven J. M. Jones (HPCS, 2006)

cisRED: a database system for genome-scale computational discovery of regulatory elements. - Gordon Robertson; Misha Bilenky; Keven Lin; An He; W. Yuen; M. Dagpinar; Richard Varhol; Kevin Teague; Obi L. Griffith; X. Zhang; Y. Pan; Maik Hassel; et al. (Nucleic Acids Res., 2006)

RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm. - Onur Sakarya; Heinz Breu; Milan Radovich; Yongzhi Chen; Yulei N. Wang; Catalin C. Barbacioru; Sowmi Utiramerur; Penn P. Whitley; Joel P. Brockman; Paolo Vatta; Zheng Zhang; Liviu Popescu; et al. (PLoS Comput. Biol., 2012)