Isometric gene tree reconciliation revisited. - Brona Brejová; Askar Gafurov; Dana Pardubská; Michal Sabo; Tomás Vinar (Algorithms Mol. Biol., 2017)

Probabilistic Models of k-mer Frequencies (Extended Abstract). - Askar Gafurov; Tomás Vinar; Brona Brejová (CiE, 2021)

Estimation of Proportions of SARS-CoV-2 Variants in a Mixed Sequencing Sample. - Askar Gafurov; Andrej Baláz; Tomás Vinar; Brona Brejová (ITAT, 2021)

Markov chains improve the significance computation of overlapping genome annotations. - Askar Gafurov; Brona Brejová; Paul Medvedev (Bioinform., 2022)

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples. - Askar Gafurov; Andrej Baláz; Fabian Amman; Kristína Borsová; Viktória Cabanová; Boris Klempa; Andreas Bergthaler; Tomás Vinar; Brona Brejová (BMC Bioinform., 2022)

Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts. - Askar Gafurov; Tomás Vinar; Paul Medvedev; Brona Brejová (RECOMB, 2024)

Fast Context-Aware Analysis of Genome Annotation Colocalization. - Askar Gafurov; Tomás Vinar; Paul Medvedev; Brona Brejová (J. Comput. Biol., 2024)