Warp: a method for neural network interpretability applied to gene expression profiles. - Assya Trofimov; Sébastien Lemieux; Claude Perreault (CoRR, 2017)

Towards the Latent Transcriptome. - Assya Trofimov; Francis Dutil; Claude Perreault; Sébastien Lemieux; Yoshua Bengio; Joseph Paul Cohen (CoRR, 2018)

Factorized embeddings learns rich and biologically meaningful embedding spaces using factorized tensor decomposition. - Assya Trofimov; Joseph Paul Cohen; Yoshua Bengio; Claude Perreault; Sébastien Lemieux (Bioinform., 2020)

Accounting for Variance in Machine Learning Benchmarks. - Xavier Bouthillier; Pierre Delaunay; Mirko Bronzi; Assya Trofimov; Brennan Nichyporuk; Justin Szeto; Nazanin Mohammadi Sepahvand; Edward Raff; Kanika Madan; Vikram Voleti; Samira Ebrahimi Kahou; Vincent Michalski; et al. (MLSys, 2021)

Accounting for Variance in Machine Learning Benchmarks. - Xavier Bouthillier; Pierre Delaunay; Mirko Bronzi; Assya Trofimov; Brennan Nichyporuk; Justin Szeto; Naz Sepah; Edward Raff; Kanika Madan; Vikram Voleti; Samira Ebrahimi Kahou; Vincent Michalski; et al. (CoRR, 2021)