IVA: accurate de novo assembly of RNA virus genomes. - Martin Hunt; Astrid Gall; Swee Hoe Ong; Jacqui Brener; Bridget Ferns; Philip J. R. Goulder; Eleni Nastouli; Jacqueline A. Keane; Paul Kellam; Thomas D. Otto (Bioinform., 2015)

Ensembl 2018. - Daniel R. Zerbino; Premanand Achuthan; Wasiu A. Akanni; M. Ridwan Amode; Daniel Barrell; Jyothish Bhai; Konstantinos Billis; Carla A. Cummins; Astrid Gall; Carlos García-Girón; Laurent Gil; Leo Gordon; et al. (Nucleic Acids Res., 2018)

Ensembl 2019. - Fiona Cunningham; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; M. Ridwan Amode; Irina M. Armean; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; Carla A. Cummins; Claire Davidson; et al. (Nucleic Acids Res., 2019)

Ensembl Genomes 2020 - enabling non-vertebrate genomic research. - Kevin L. Howe; Bruno Contreras-Moreira; Nishadi De Silva; Gareth Maslen; Wasiu A. Akanni; James E. Allen; Jorge Álvarez-Jarreta; Matthieu Barba; Dan M. Bolser; Lahcen Cambell; Manuel Carbajo; Marc Chakiachvili; et al. (Nucleic Acids Res., 2020)

Ensembl 2020. - Andrew D. Yates; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; et al. (Nucleic Acids Res., 2020)

Ensembl 2021. - Kevin L. Howe; Premanand Achuthan; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; et al. (Nucleic Acids Res., 2021)

The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. - Nishadi De Silva; Jyothish Bhai; Marc Chakiachvili; Bruno Contreras-Moreira; Carla A. Cummins; Adam Frankish; Astrid Gall; Thiago Augusto Lopes Genez; Kevin L. Howe; Sarah E. Hunt; Fergal J. Martin; Benjamin Moore; et al. (Nucleic Acids Res., 2022)

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. - Andrew D. Yates; James E. Allen; M. Ridwan Amode; Andrey G. Azov; Matthieu Barba; Andrés Becerra; Jyothish Bhai; Lahcen I. Campbell; Manuel Carbajo Martinez; Marc Chakiachvili; Kapeel Chougule; Mikkel B. Christensen; et al. (Nucleic Acids Res., 2022)

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data. - Tanya Golubchik; Lucie Abeler-Dörner; Matthew Hall; Chris Wymant; David G. Bonsall; George Macintyre-Cockett; Laura Thomson; Jared M. Baeten; Connie L. Celum; Ronald Galiwango; Barry Kosloff; Mohammed Limbada; et al. (BMC Bioinform., 2025)