Evaluation of design strategies for time course experiments in genetic networks: the XlnR regulon in Aspergillus niger. - Jimmy Omony; Astrid R. Mach-Aigner; Leo H. de Graaff; Gerrit van Straten; Anton J. B. van Boxtel (CMSB, 2011)

Evaluation of Design Strategies for Time Course Experiments in Genetic Networks: Case Study of the XlnR Regulon in Aspergillus niger. - Jimmy Omony; Astrid R. Mach-Aigner; Leo H. de Graaff; Gerrit van Straten; Anton J. B. van Boxtel (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in Aspergillus niger. - Jimmy Omony; Astrid R. Mach-Aigner; Gerrit van Straten; Anton J. B. van Boxtel (BMC Syst. Biol., 2016)

FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution. - Gabriel A. Vignolle; Denise Schaffer; Leopold Zehetner; Robert L. Mach; Astrid R. Mach-Aigner; Christian Derntl (PLoS Comput. Biol., 2021)

FunFEA: an R package for fungal functional enrichment analysis. - Julien Charest; Paul Loebenstein; Robert L. Mach; Astrid R. Mach-Aigner (BMC Bioinform., 2025)