Discovery of Functional Motifs from the Interface Region of Oligomeric Proteins Using Frequent Subgraph Mining. - Tanay Kumar Saha; Ataur Katebi; Wajdi Dhifli; Mohammad Al Hasan (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits. - Vivek Kohar; Danya Gordin; Ataur Katebi; Herbert Levine; José N. Onuchic; Mingyang Lu (Bioinform., 2021)

Enhanced Graph Representation Convolution: Effective Inferring Gene Regulatory Network Using Graph Convolution Network with Self-Attention Graph Pooling Layer. - Duaa Mohammad Alawad; Ataur Katebi; Md. Tamjidul Hoque (Mach. Learn. Knowl. Extr., 2024)

PPILS: Protein-protein interaction prediction with language of biological coding. - Nayan Howladar; Md Wasi Ul Kabir; Foyzul Hoque; Ataur Katebi; Md. Tamjidul Hoque (Comput. Biol. Medicine, 2025)