The Use of Multiple Hierarchically Independent Gene Ontology Terms in Gene Function Prediction and Genome Annotation. - Yiannis Kourmpetis; Ate van der Burgt; Marco C. A. M. Bink; Cajo J. F. ter Braak; Roeland C. H. J. van Ham (Silico Biol., 2007)

High-throughput bioinformatics with the Cyrille2 pipeline system. - Mark W. E. J. Fiers; Ate van der Burgt; Erwin Datema; Joost C. W. de Groot; Roeland C. H. J. van Ham (BMC Bioinform., 2008)

Automated alignment-based curation of gene models in filamentous fungi. - Ate van der Burgt; Edouard Severing; Jérôme Collemare; Pierre J. G. M. de Wit (BMC Bioinform., 2014)