Approximation Algorithm for Sorting by Reversals and Transpositions. - Atif Rahman 001; Swakkhar Shatabda; Masud Hasan (WALCOM, 2007)

An approximation algorithm for sorting by reversals and transpositions. - Atif Rahman 001; Swakkhar Shatabda; Masud Hasan (J. Discrete Algorithms, 2008)

Pancake Flipping with Two Spatulas. - Mahfuza Sharmin; Rukhsana Yeasmin; Masud Hasan; Atif Rahman 001; Mohammad Sohel Rahman (Electron. Notes Discret. Math., 2010)

Pancake flipping and sorting permutations. - Masud Hasan; Atif Rahman 001; Md. Khaledur Rahman; Mohammad Sohel Rahman; Mahfuza Sharmin; Rukhsana Yeasmin (J. Discrete Algorithms, 2015)

Statistical Models for Genome Assembly and Analysis. - Atif Rahman 001 (2015)

On Multiple Longest Common Subsequence and Common Motifs with Gaps (Extended Abstract). - Suri Dipannita Sayeed; M. Sohel Rahman; Atif Rahman 001 (WALCOM, 2018)

An ensemble learning based approach for impression fraud detection in mobile advertising. - Ch. Md. Rakin Haider; Anindya Iqbal; Atif Hasan Rahman 001; M. Sohel Rahman (J. Netw. Comput. Appl., 2018)

Transcript Abundance Estimation and the Laminar Packing Problem. - Atif Rahman 001; Lior Pachter (AlCoB, 2019)

A 'phylogeny-aware' multi-objective optimization approach for computing MSA. - Muhammad Ali Nayeem; Md. Shamsuzzoha Bayzid; Atif Hasan Rahman 001; Rifat Shahriyar; M. Sohel Rahman (GECCO, 2019)

BayesBeat: A Bayesian Deep Learning Approach for Atrial Fibrillation Detection from Noisy Photoplethysmography Data. - Sarkar Snigdha Sarathi Das; Subangkar Karmaker Shanto; Masum Rahman; Md. Saiful Islam 013; Atif Rahman 001; Mohammad Mehedy Masud; Mohammed Eunus Ali (CoRR, 2020)

MALIGN: Adversarially Robust Malware Family Detection using Sequence Alignment. - Shoumik Saha; Sadia Afroz; Atif Rahman 001 (CoRR, 2021)

Figbird: a probabilistic method for filling gaps in genome assemblies. - Sumit Tarafder; Mazharul Islam; Swakkhar Shatabda; Atif Rahman 001 (Bioinform., 2022)

BayesBeat: Reliable Atrial Fibrillation Detection from Noisy Photoplethysmography Data. - Sarkar Snigdha Sarathi Das; Subangkar Karmaker Shanto; Masum Rahman; Md. Saiful Islam 013; Atif Hasan Rahman 001; Mohammad Mehedy Masud; Mohammed Eunus Ali (Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., 2022)

Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference. - Muhammad Ali Nayeem; Md. Shamsuzzoha Bayzid; Atif Hasan Rahman 001; Rifat Shahriyar; M. Sohel Rahman (IEEE Trans. Cybern., 2022)

Optimal K-mer Analysis for Alignment Free Phylogenetic Tree. - Rubyeat Islam; Md Yusuf; Swapnil Biswas; Atif Hasan Rahman 001 (ICBRA, 2023)

Contrastive Self-Supervised Learning Based Approach for Patient Similarity: A Case Study on Atrial Fibrillation Detection from PPG Signal. - Subangkar Karmaker Shanto; Shoumik Saha; Atif Hasan Rahman 001; Mohammad Mehedy Masud; Mohammed Eunus Ali (CoRR, 2023)

MAlign: Explainable static raw-byte based malware family classification using sequence alignment. - Shoumik Saha; Sadia Afroz; Atif Hasan Rahman 001 (Comput. Secur., 2024)

An alignment-free method for phylogeny estimation using maximum likelihood. - Tasfia Zahin; Md. Hasin Abrar; Mizanur Rahman Jewel; Tahrina Tasnim; Md. Shamsuzzoha Bayzid; Atif Rahman 001 (BMC Bioinform., 2025)