Towards Biopathway Modeling and Simulation. - Hiroshi Matsuno; Sachie Fujita; Atsushi Doi; Masao Nagasaki; Satoru Miyano (ICATPN, 2003)

Recreating Biopathway Databases towards Simulation. - Masao Nagasaki; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (CMSB, 2003)

Biopathways representation and simulation on hybrid functional Petri net. - Hiroshi Matsuno; Yukiko Tanaka; Hitoshi Aoshima; Atsushi Doi; Mika Matsui; Satoru Miyano (Silico Biol., 2003)

Integrating Biopathway Databases for Large-scale Modeling and Simulation. - Masao Nagasaki; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (APBC, 2004)

Constructing biological pathway models with hybrid functional Petri net. - Atsushi Doi; Sachie Fujita; Hiroshi Matsuno; Masao Nagasaki; Satoru Miyano (Silico Biol., 2004)

Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. - Atsushi Doi; Masao Nagasaki; Hiroshi Matsuno; Satoru Miyano (Silico Biol., 2006)

Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles. - Ryo Yoshida; Kazuyuki Numata; Seiya Imoto; Masao Nagasaki; Atsushi Doi; Kazuko Ueno; Satoru Miyano (BIBE, 2007)

Foundations of Systems Biology - Using Cell Illustrator® and Pathway Databases. - Masao Nagasaki; Ayumu Saito; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (Springer, 2009)

Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. - Yoshinori Tamada; Hiromitsu Araki; Seiya Imoto; Masao Nagasaki; Atsushi Doi; Yukiko Nakanishi; Yuki Tomiyasu; Kaori Yasuda; Ben Dunmore; Deborah Sanders; Sally Humphreys; Cristin G. Print; et al. (Pacific Symposium on Biocomputing, 2009)

Elucidation of EEG Characteristics of Fuzzy Reasoning-Based Heuristic BCI and Its Application to Patient With Brain Infarction. - Norihiko Saga; Atsushi Doi; Teruo Oda; Suguru N. Kudoh (Frontiers Neurorobotics, 2020)