Simulation analysis of hybridization process for DNA computing with concentration control. - Masahito Yamamoto; Atsushi Kameda; Nobuo Matsuura; Toshikazu Shiba; Azuma Ohuchi (IEEE Congress on Evolutionary Computation, 2002)

Hierarchical DNA Memory Based on Nested PCR. - Satoshi Kashiwamura; Masahito Yamamoto; Atsushi Kameda; Toshikazu Shiba; Azuma Ohuchi (DNA, 2002)

An Analysis of Computational Efficiency of DNA Computing. - Atsushi Kameda; Nobuo Matsuura; Masahito Yamamoto; Azuma Ohuchi (UMC, 2002)

Local Search by Concentration-Controlled DNA Computing. - Masahito Yamamoto; Yumi Kawazoe; Azuma Ohuchi; Atsushi Kameda; Nobuo Matsuura; Toshikazu Shiba (Int. J. Comput. Intell. Appl., 2002)

A Separation Method for DNA Computing Based on Concentration Control. - Masahito Yamamoto; Atsushi Kameda; Nobuo Matsuura; Toshikazu Shiba; Yumi Kawazoe; Azuma Ohuchi (New Gener. Comput., 2002)

Conformational Addressing Using the Hairpin Structure of Single-Strand DNA. - Atsushi Kameda; Masahito Yamamoto; Hiroki Uejima; Masami Hagiya; Kensaku Sakamoto; Azuma Ohuchi (DNA, 2003)

Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loo. - Fumiaki Tanaka; Atsushi Kameda; Masahito Yamamoto; Azuma Ohuchi (DNA, 2003)

The Effect of the Bulge Loop upon the Hybridization Process in DNA Computing. - Fumiaki Tanaka; Atsushi Kameda; Masahito Yamamoto; Azuma Ohuchi (ICES, 2003)

Aqueous Computing with DNA Hairpin-Based RAM. - Naoto Takahashi; Atsushi Kameda; Masahito Yamamoto; Azuma Ohuchi (DNA, 2004)

Development, evaluation and benchmarking of simulation software for biomolecule-based computing. - Derrel Blain; Max H. Garzon; Soo-Yong Shin; Byoung-Tak Zhang; Satoshi Kashiwamura; Masahito Yamamoto; Atsushi Kameda; Azuma Ohuchi (Nat. Comput., 2004)

Chain Reaction Systems Based on Loop Dissociation of DNA. - Keiichiro Takahashi; Satsuki Yaegashi; Atsushi Kameda; Masami Hagiya (DNA, 2005)

Specificity of Hybridization Between DNA Sequences Based on Free Energy. - Fumiaki Tanaka; Atsushi Kameda; Masahito Yamamoto; Azuma Ohuchi (DNA, 2005)

Hairpin-based state machine and conformational addressing: Design and experiment. - Atsushi Kameda; Masahito Yamamoto; Hiroki Uejima; Masami Hagiya; Kensaku Sakamoto; Azuma Ohuchi (Nat. Comput., 2005)

Sequence Design for Stable DNA Tiles. - Naoki Iimura; Masahito Yamamoto; Fumiaki Tanaka; Atsushi Kameda; Azuma Ohuchi (DNA, 2006)

Development of DNA Relational Database and Data Manipulation Experiments. - Masahito Yamamoto; Yutaka Kita; Satoshi Kashiwamura; Atsushi Kameda; Azuma Ohuchi (DNA, 2006)

Combining Randomness and a High-Capacity DNA Memory. - Atsushi Kameda; Satoshi Kashiwamura; Masahito Yamamoto; Azuma Ohuchi; Masami Hagiya (DNA, 2007)

Unravel four hairpins! - Atsushi Kameda; Masahito Yamamoto; Azuma Ohuchi; Satsuki Yaegashi; Masami Hagiya (Nat. Comput., 2008)