Time scale and dimension analysis of a budding yeast cell cycle model. - Anna Lovrics; Attila Csikász-Nagy; István Gy Zsély; Judit Zádor; Tamás Turányi; Béla Novák (BMC Bioinform., 2006)

Studying Irreversible Transitions in a Model of Cell Cycle Regulation. - Paolo Ballarini; Tommaso Mazza; Alida Palmisano; Attila Csikász-Nagy (PASM@EPEW, 2008)

Analyzing various models of Circadian Clock and Cell Cycle coupling. - Attila Csikász-Nagy; Adrien Fauré; Roberto Larcher; Paola Lecca; Ivan Mura; Ferenc Jordán; Alida Palmisano; Alessandro Romanel; Sean Sedwards; Heike Siebert; Sylvain Soliman; Denis Thieffry; et al. (Formal Methods in Molecular Biology, 2009)

Computational systems biology of the cell cycle. - Attila Csikász-Nagy (Briefings Bioinform., 2009)

Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms. - Christian I. Hong; Judit Zámborszky; Attila Csikász-Nagy (PLoS Comput. Biol., 2009)

Role of mRNA Gestation and Senescence in Noise Reduction during the Cell Cycle. - Attila Csikász-Nagy; Ivan Mura (Silico Biol., 2010)

Linkers of Cell Polarity and Cell Cycle Regulation in the Fission Yeast Protein Interaction Network. - Federico Vaggi; James Dodgson; Archana Bajpai; Anatole Chessel; Ferenc Jordán; Masamitsu Sato; Rafael Edgardo Carazo-Salas; Attila Csikász-Nagy (PLoS Comput. Biol., 2012)

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae. - Flavio Amara; Riccardo Colombo; Paolo Cazzaniga; Dario Pescini; Attila Csikász-Nagy; Marco Falconi; Daniela Besozzi; Paolo Plevani (BMC Syst. Biol., 2013)

Dynamics of SIN Asymmetry Establishment. - Archana Bajpai; Anna Feoktistova; Jun-Song Chen; Dannel McCollum; Masamitsu Sato; Rafael Edgardo Carazo-Salas; Kathleen L. Gould; Attila Csikász-Nagy (PLoS Comput. Biol., 2013)

Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations. - Simone Rizzetto; Corrado Priami; Attila Csikász-Nagy (PLoS Comput. Biol., 2015)

Efficient Switches in Biology and Computer Science. - Luca Cardelli; Rosa D. Hernansaiz-Ballesteros; Neil Dalchau; Attila Csikász-Nagy (PLoS Comput. Biol., 2017)

Single molecules can operate as primitive biological sensors, switches and oscillators. - Rosa D. Hernansaiz-Ballesteros; Luca Cardelli; Attila Csikász-Nagy (BMC Syst. Biol., 2018)

Computing with biological switches and clocks. - Neil Dalchau; Gregory Szép; Rosa D. Hernansaiz-Ballesteros; Chris P. Barnes; Luca Cardelli; Andrew Phillips; Attila Csikász-Nagy (Nat. Comput., 2018)

Parameter Inference with Bifurcation Diagrams. - Gregory Szép; Neil Dalchau; Attila Csikász-Nagy (NeurIPS, 2021)

Systematic analysis of noise reduction properties of coupled and isolated feed-forward loops. - Suchana Chakravarty; Attila Csikász-Nagy (PLoS Comput. Biol., 2021)

Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach. - Marcell Miski; Bence Márk Keömley-Horváth; Dorina Rákóczi Megyeriné; Attila Csikász-Nagy; Zoltán Gáspári (PLoS Comput. Biol., 2022)

Microsimulation based quantitative analysis of COVID-19 management strategies. - István Z. Reguly; Dávid Csercsik; János Juhász; Kálmán Tornai; Zsófia Bujtár; Gergely Horváth; Bence Keömley-Horváth; Tamás Kós; György Cserey; Kristóf Iván; Sándor Pongor; Gábor Szederkényi; et al. (PLoS Comput. Biol., 2022)