Evolvability of the Genotype-Phenotype Relation in Populations of Self-Replicating Digital Organisms in a Tierra-Like System. - Attila Egri-Nagy; Chrystopher L. Nehaniv (ECAL, 2003)

Mirroring, Deixis, and Interaction Topology in the Emergence of Shared Vocabularies. - Elizabeth Jean Baillie; Chrystopher L. Nehaniv; Patrick Quick; Attila Egri-Nagy; Sandra Warren (JSAI Workshops, 2004)

Algebraic Hierarchical Decomposition of Finite State Automata: Comparison of Implementations for Krohn-Rhodes Theory. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CIAA, 2004)

Algebraic hierarchical decomposition of finite state automata : a computational approach. - Attila Egri-Nagy (2005)

Making Sense of the Sensory Data - Coordinate Systems by Hierarchical Decomposition. - Attila Egri-Nagy; Chrystopher L. Nehaniv (KES (3), 2006)

Cycle Structure in Automata and the Holonomy Decomposition. - Attila Egri-Nagy; Chrystopher L. Nehaniv (Acta Cybern., 2006)

The NetBuilder' project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks. - Katja Wegner; Johannes F. Knabe; Mark Robinson; Attila Egri-Nagy; Maria J. Schilstra; Chrystopher L. Nehaniv (BMC Syst. Biol., 2007)

Hierarchical Coordinate Systems for Understanding Complexity and its Evolution, with Applications to Genetic Regulatory Networks. - Attila Egri-Nagy; Chrystopher L. Nehaniv (Artif. Life, 2008)

Algebraic properties of automata associated to Petri nets and applications to computation in biological systems. - Attila Egri-Nagy; Chrystopher L. Nehaniv (Biosyst., 2008)

Automatic analysis of computation in biochemical reactions. - Attila Egri-Nagy; Chrystopher L. Nehaniv; John L. Rhodes 001; Maria J. Schilstra (Biosyst., 2008)

Transformation Semigroups as Constructive Dynamical Spaces. - Attila Egri-Nagy; Paolo Dini; Chrystopher L. Nehaniv; Maria J. Schilstra (OPAALS, 2010)

On Straight Words and Minimal Permutators in Finite Transformation Semigroups. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CIAA, 2010)

Information processing in cells and tissues (IPCAT'2009): From small scale dynamics to understanding systems behavior. - Attila Egri-Nagy; Brigitte Galliot; Felix Naef; Chrystopher L. Nehaniv (Biosyst., 2010)

Algorithms for the Efficient Calculation of the Holonomy Decomposition. - Attila Egri-Nagy; James D. Mitchell; Chrystopher L. Nehaniv (AFL, 2011)

Symmetries of Automata. - Attila Egri-Nagy; Chrystopher L. Nehaniv (AFL, 2011)

Applications of Automata Theory and Algebra via the Mathematical Theory of Complexity to Biology, Physics, Psychology, Philosophy, and Games. John Rhodes. Chrystopher L. Nehaniv (Ed.). Foreword by Morris W. Hirsch. (2009, World Scientific Books.) ISBN: 978-981-283-696-0, US$65 (hardcover); ISBN: 978-981-283-697-7, US$39 (paperback). - Attila Egri-Nagy (Artif. Life, 2011)

Algebraic Analysis of the Computation in the Belousov-Zhabotinksy Reaction. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra (IPCAT, 2012)

BIOMICS Project: Biological and Mathematical Basis of Interaction Computing. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra; Daniel Schreckling; Joachim Posegga; Gábor Horváth; Alastair J. Munro (Int. J. Unconv. Comput., 2012)

Exploring the concept of interaction computing through the discrete algebraic analysis of the Belousov-Zhabotinsky reaction. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra (Biosyst., 2013)

Compact Notation for Finite Transformations. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CoRR, 2013)

Bacterial Genomics and Computational Group Theory: The BioGAP Package for GAP. - Attila Egri-Nagy; Andrew R. Francis; Volker Gebhardt (ICMS, 2014)

SgpDec: Cascade (De)Compositions of Finite Transformation Semigroups and Permutation Groups. - Attila Egri-Nagy; James D. Mitchell; Chrystopher L. Nehaniv (ICMS, 2014)

Computational Understanding and Manipulation of Symmetries. - Attila Egri-Nagy; Chrystopher L. Nehaniv (ACALCI, 2015)

Finite Computational Structures and Implementations. - Attila Egri-Nagy (CANDAR, 2016)

Declarativeness: the work done by something else. - Attila Egri-Nagy (CoRR, 2017)

The Algebraic View of Computation. - Attila Egri-Nagy (CoRR, 2017)

On the atoms of algebraic lattices arising in 픮-theory. - Attila Egri-Nagy; Marcel Jackson; John Rhodes 001; Benjamin Steinberg (Int. J. Algebra Comput., 2017)

Finite Computational Structures and Implementations: Semigroups and Morphic Relations. - Attila Egri-Nagy (Int. J. Netw. Comput., 2017)

|{Math, Philosophy, Programming, Writing}| = 1. - Attila Egri-Nagy (CoRR, 2018)

Bacterial phylogeny in the Cayley graph. - Chad Clark; Attila Egri-Nagy; Andrew R. Francis; Volker Gebhardt (Discret. Math. Algorithms Appl., 2019)

Computing finite semigroups. - James East; Attila Egri-Nagy; James D. Mitchell; Yann H. Péresse (J. Symb. Comput., 2019)

Derived metrics for the game of Go - intrinsic network strength assessment and cheat-detection. - Attila Egri-Nagy; Antti Törmänen (CANDAR, 2020)

The cost of passing - using deep learning AIs to expand our understanding of the ancient game of Go. - Attila Egri-Nagy; Antti Törmänen (CANDAR, 2022)

From Relation to Emulation and Interpretation: Computer Algebra Implementation of the Covering Lemma for Finite Transformation Semigroups. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CIAA, 2024)

On Constructing Finite Automata by Relational Programming. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CoRR, 2025)

Computational Exploration of Finite Semigroupoids. - Attila Egri-Nagy; Chrystopher L. Nehaniv (CoRR, 2025)

Bringing Algebraic Hierarchical Decompositions to Concatenative Functional Languages. - Attila Egri-Nagy (CoRR, 2025)