arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. - Audrey Kauffmann; Robert Gentleman; Wolfgang Huber (Bioinform., 2009)

Importing ArrayExpress datasets into R/Bioconductor. - Audrey Kauffmann; Tim F. Rayner; Helen E. Parkinson; Misha Kapushesky; Margus Lukk; Alvis Brazma; Wolfgang Huber (Bioinform., 2009)

Correction of copy number induced false positives in CRISPR screens. - Antoine de Weck; Javad Golji; Michael D. Jones; Joshua M. Korn; Eric Billy; E. Robert McDonald III; Tobias Schmelzle; Hans Bitter; Audrey Kauffmann (PLoS Comput. Biol., 2018)

Ten simple rules to power drug discovery with data science. - Enrico Ferrero; Sophie Brachat; Jeremy L. Jenkins; Philippe Marc; Peter Skewes-Cox; Robert C. Altshuler; Caroline Gubser Keller; Audrey Kauffmann; Erik K. Sassaman; Jason M. Laramie; Birgit Schoeberl; Mark L. Borowsky; et al. (PLoS Comput. Biol., 2020)

Fully unsupervised deep mode of action learning for phenotyping high-content cellular images. - Rens Janssens; Xian Zhang; Audrey Kauffmann; Antoine de Weck; Eric Y. Durand (Bioinform., 2021)