Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. - Audrey M. Michel; Dmitry E. Andreev; Pavel V. Baranov (BMC Bioinform., 2014)

GWIPS-viz: development of a ribo-seq genome browser. - Audrey M. Michel; Gearoid Fox; Anmol M. Kiran; Christof De Bo; Patrick B. F. O'Connor; Stephen M. Heaphy; James P. A. Mullan; Claire A. Donohue; Desmond G. Higgins; Pavel V. Baranov (Nucleic Acids Res., 2014)

Improving data workflow systems with cloud services and use of open data for bioinformatics research. - Md. Rezaul Karim 001; Audrey M. Michel; Achille Zappa; Pavel V. Baranov; Ratnesh Sahay; Dietrich Rebholz-Schuhmann (Briefings Bioinform., 2018)

GWIPS-viz: 2018 update. - Audrey M. Michel; Stephen J. Kiniry; Patrick B. F. O'Connor; James P. A. Mullan; Pavel V. Baranov (Nucleic Acids Res., 2018)

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. - Stephen J. Kiniry; Patrick B. F. O'Connor; Audrey M. Michel; Pavel V. Baranov (Nucleic Acids Res., 2019)

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. - Stephen J. Kiniry; Ciara E. Judge; Audrey M. Michel; Pavel V. Baranov (Nucleic Acids Res., 2021)