A Graphical Modelling Approach to the Dissection of Highly Correlated Transcription Factor Binding Site Profiles. - Robert Stojnic; Audrey Qiuyan Fu; Boris Adryan (PLoS Comput. Biol., 2012)

MRPC: An R package for accurate inference of causal graphs. - Md. Bahadur Badsha; Evan A. Martin; Audrey Qiuyan Fu (CoRR, 2018)

Systematic identification of A-to-I editing associated regulators from multiple human cancers. - Tongjun Gu; Audrey Qiuyan Fu; Michael J. Bolt; Xiwu Zhao (Comput. Biol. Medicine, 2020)

Imputation of single-cell gene expression with an autoencoder neural network. - Md. Bahadur Badsha; Rui Li; Boxiang Liu; Yang I. Li; Min Xian; Nicholas E. Banovich; Audrey Qiuyan Fu (Quant. Biol., 2020)