RSeqAn: Headers and wrappers for the SeqAn library in R. - August Guang (J. Open Source Softw., 2019)

T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clusters. - August Guang; Casey W. Dunn; Vlad Novitsky; Mark Howison; Rami Kantor (PLoS Comput. Biol., 2025)