The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. - Aureliano Bombarely; Naama Menda; Isaak Y. Tecle; Robert M. Buels; Susan Strickler; Thomas Fischer-York; Anuradha Pujar; Jonathan Leto; Joseph Gosselin; Lukas A. Mueller (Nucleic Acids Res., 2011)

From manual curation to visualization of gene families and networks across Solanaceae plant species. - Anuradha Pujar; Naama Menda; Aureliano Bombarely; Jeremy D. Edwards; Susan Strickler; Lukas A. Mueller (Database J. Biol. Databases Curation, 2013)

The Genome Database for Rosaceae (GDR): year 10 update. - Sook Jung; Stephen P. Ficklin; Taein Lee; Chun-Huai Cheng; Anna Blenda; Ping Zheng; Jing Yu 002; Aureliano Bombarely; Ilhyung Cho; Sushan Ru; Kate Evans; Cameron Peace; et al. (Nucleic Acids Res., 2014)

The Sol Genomics Network (SGN) - from genotype to phenotype to breeding. - Noé Fernández-Pozo; Naama Menda; Jeremy D. Edwards; Surya Saha; Isaak Y. Tecle; Susan R. Strickler; Aureliano Bombarely; Thomas Fisher-York; Anuradha Pujar; Hartmut Foerster; Aimin Yan; Lukas A. Mueller (Nucleic Acids Res., 2015)

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases. - Hartmut Foerster; Aureliano Bombarely; James N. D. Battey; Nicolas Sierro; Nikolai V. Ivanov; Lukas A. Mueller (Database J. Biol. Databases Curation, 2018)

DeepTE: a computational method for de novo classification of transposons with convolutional neural network. - Haidong Yan; Aureliano Bombarely; Song Li (Bioinform., 2020)

EasyGDB: a low-maintenance and highly customizable system to develop genomics portals. - Noé Fernández-Pozo; Aureliano Bombarely (Bioinform., 2022)