Graph inference enhancement with clustering: Application to Gene Regulatory Network reconstruction. - Aurélie Pirayre; Camille Couprie; Laurent Duval; Jean-Christophe Pesquet (EUSIPCO, 2015)

Fast convex optimization for connectivity enforcement in gene regulatory network inference. - Aurélie Pirayre; Camille Couprie; Laurent Duval; Jean-Christophe Pesquet (ICASSP, 2015)

BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference. - Aurélie Pirayre; Camille Couprie; Frédérique Bidard; Laurent Duval; Jean-Christophe Pesquet (BMC Bioinform., 2015)

HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation. - Aurélie Pirayre; Yuling Zheng; Laurent Duval; Jean-Christophe Pesquet (ICIP, 2017)

Reconstruction and Clustering with Graph optimization and Priors on Gene networks and Images. (Reconstruction et classification à partir d'optimisation dans des graphes et a priori sur des réseaux de gènes et images). - Aurélie Pirayre (2017)

BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement. - Aurélie Pirayre; Camille Couprie; Laurent Duval; Jean-Christophe Pesquet (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

From trips database to real-world fuel consumption. model and large-scale simulation framework. - Pierre Michel; Aurélie Pirayre; Sol Selene Rodríguez; Alexandre Chasse (ITSC, 2020)

BRANEnet: embedding multilayer networks for omics data integration. - Surabhi Jagtap; Aurélie Pirayre; Frédérique Bidard; Laurent Duval; Fragkiskos D. Malliaros (BMC Bioinform., 2022)

Driving Behavior Identification and Real-World Fuel Consumption Estimation With Crowdsensing Data. - Aurélie Pirayre; Pierre Michel; Sol Selene Rodríguez; Alexandre Chasse (IEEE Trans. Intell. Transp. Syst., 2022)

BraneMF: integration of biological networks for functional analysis of proteins. - Surabhi Jagtap; Abdulkadir Çelikkanat; Aurélie Pirayre; Frédérique Bidard; Laurent Duval; Fragkiskos D. Malliaros (Bioinform., 2022)

Clustering Dynamics for Improved Speed Prediction Deriving from Topographical GPS Registrations. - Sarah Almeida Carneiro; Giovanni Chierchia; Aurélie Pirayre; Laurent Najman (CoRR, 2024)