A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits. - Austin W. T. Chiang; Ming-Jing Hwang (BMC Bioinform., 2013)

Hkera, a human transcriptome partitioner. - Austin W. T. Chiang; Grace Shaw; Ming-Jing Hwang (IWBBIO, 2014)

Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters. - Austin W. T. Chiang; Wei-Chung Liu; Pep Charusanti; Ming-Jing Hwang (BMC Syst. Biol., 2014)

Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs. - Austin W. T. Chiang; Walt Y. L. Wu; Ting Wang; Ming-Jing Hwang (PLoS Comput. Biol., 2017)

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions. - Anne Richelle; Austin W. T. Chiang; Chih-Chung Kuo; Nathan E. Lewis (PLoS Comput. Biol., 2019)