sDFIRE: Sequence-specific statistical energy function for protein structure prediction by decoy selections. - Md. Tamjidul Hoque; Yuedong Yang; Avdesh Mishra; Yaoqi Zhou (J. Comput. Chem., 2016)

Multiclass patent document classification. - Chaitanya Anne; Avdesh Mishra; Md. Tamjidul Hoque; Shengru Tu (Artif. Intell. Res., 2018)

StackDPPred: a stacking based prediction of DNA-binding protein from sequence. - Avdesh Mishra; Pujan Pokhrel; Md. Tamjidul Hoque (Bioinform., 2019)

Machine Learning based Prediction of Hierarchical Classification of Transposable Elements. - Manisha Panta; Avdesh Mishra; Md. Tamjidul Hoque; Joel Atallah (CoRR, 2019)

A Machine Learning Approach to Determine Oyster Vessel Behavior. - Devin Joseph Frey; Avdesh Mishra; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Thomas Soniat (Mach. Learn. Knowl. Extr., 2019)

AIBH: Accurate Identification of Brain Hemorrhage Using Genetic Algorithm Based Feature Selection and Stacking. - Duaa Mohammad Alawad; Avdesh Mishra; Md. Tamjidul Hoque (Mach. Learn. Knowl. Extr., 2020)

Hierarchy-Based File Fragment Classification. - Manish Bhatt; Avdesh Mishra; Md Wasi Ul Kabir; S. E. Blake-Gatto; Rishav Rajendra; Md. Tamjidul Hoque; Irfan Ahmed 001 (Mach. Learn. Knowl. Extr., 2020)

AIRBP: Accurate identification of RNA-binding proteins using machine learning techniques. - Avdesh Mishra; Reecha Khanal; Md Wasi Ul Kabir; Tamjidul Hoque (Artif. Intell. Medicine, 2021)

ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements. - Manisha Panta; Avdesh Mishra; Md. Tamjidul Hoque; Joel Atallah (Bioinform., 2021)

diSBPred: A machine learning based approach for disulfide bond prediction. - Avdesh Mishra; Md Wasi Ul Kabir; Md. Tamjidul Hoque (Comput. Biol. Chem., 2021)

Prediction of Phi and Psi Angle Fluctuations from Protein Sequences. - Md Wasi Ul Kabir; Duaa Mohammad Alawad; Avdesh Mishra; Md. Tamjidul Hoque (CIBCB, 2023)

COVID-19 radiograph prognosis using a deep CResNeXt network. - Dhirendra Prasad Yadav; Anand Singh Jalal; Ayush Goyal; Avdesh Mishra; Khem Uprety; Nirmal Guragai (Multim. Tools Appl., 2023)

AI2DS: Advanced Deep Autoencoder-Driven Method for Intelligent Network Intrusion Detection Systems. - Md. Habibur Rahman; Leo Martinez; Avdesh Mishra; Mais Nijim; Ayush Goyal; David Hicks (ICAIC, 2025)