Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. - Curtis Huttenhower; Avi I. Flamholz; Jessica N. Landis; Sauhard Sahi; Chad L. Myers; Kellen L. Olszewski; Matthew A. Hibbs; Nathan O. Siemers; Olga G. Troyanskaya; Hilary A. Coller (BMC Bioinform., 2007)

Hydrophobicity and Charge Shape Cellular Metabolite Concentrations. - Arren Bar-Even; Elad Noor; Avi I. Flamholz; Joerg M. Buescher; Ron Milo (PLoS Comput. Biol., 2011)

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage. - Elad Noor; Arren Bar-Even; Avi I. Flamholz; Yaniv Lubling; Dan Davidi; Ron Milo (Bioinform., 2012)

eQuilibrator - the biochemical thermodynamics calculator. - Avi I. Flamholz; Elad Noor; Arren Bar-Even; Ron Milo (Nucleic Acids Res., 2012)

Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism. - Elad Noor; Arren Bar-Even; Avi I. Flamholz; Ed Reznik; Wolfram Liebermeister; Ron Milo (PLoS Comput. Biol., 2014)

The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. - Elad Noor; Avi I. Flamholz; Arren Bar-Even; Dan Davidi; Ron Milo; Wolfram Liebermeister (PLoS Comput. Biol., 2016)

Quantum chemistry reveals thermodynamic principles of redox biochemistry. - Adrian Jinich; Avi I. Flamholz; Haniu Ren; Sungjin Kim; Benjamín Sánchez-Lengeling; Charles A. R. Cotton; Elad Noor; Alán Aspuru-Guzik; Arren Bar-Even (PLoS Comput. Biol., 2018)

eQuilibrator 3.0: a database solution for thermodynamic constant estimation. - Moritz E. Beber; Mattia G. Gollub; Dana Mozaffari; Kevin M. Shebek; Avi I. Flamholz; Ron Milo; Elad Noor (Nucleic Acids Res., 2022)

Anthroponumbers.org: A quantitative database of human impacts on Planet Earth. - Griffin Chure; Rachel A. Banks; Avi I. Flamholz; Nicholas S. Sarai; Mason Kamb; Ignacio Lopez-Gomez; Yinon Bar-On; Ron Milo; Rob Phillips (Patterns, 2022)