FAst MEtabolizer (FAME): A Rapid and Accurate Predictor of Sites of Metabolism in Multiple Species by Endogenous Enzymes. - Johannes Kirchmair; Mark J. Williamson; Avid M. Afzal; Jonathan D. Tyzack; Alison P. K. Choy; Andrew Howlett; Patrik Rydberg; Robert C. Glen (J. Chem. Inf. Model., 2013)

Target Fishing: A Single-Label or Multi-Label Problem? - Avid M. Afzal; Hamse Y. Mussa; Richard E. Turner; Andreas Bender 002; Robert C. Glen (CoRR, 2014)

A multi-label approach to target prediction taking ligand promiscuity into account. - Avid M. Afzal; Hamse Y. Mussa; Richard E. Turner; Andreas Bender 002; Robert C. Glen (J. Cheminformatics, 2015)

Target prediction utilising negative bioactivity data covering large chemical space. - Lewis H. Mervin; Avid M. Afzal; Georgios Drakakis; Richard Lewis 002; Ola Engkvist; Andreas Bender 002 (J. Cheminformatics, 2015)

The Parzen Window method: In terms of two vectors and one matrix. - Hamse Y. Mussa; John B. O. Mitchell; Avid M. Afzal (Pattern Recognit. Lett., 2015)

Maximizing Gain in HTS Screening Using Conformal Prediction. - Ulf Norinder; Fredrik Svensson; Avid M. Afzal; Andreas Bender 002 (COPA, 2017)

Orthologue chemical space and its influence on target prediction. - Lewis H. Mervin; Krishna C. Bulusu; Leen Kalash; Avid M. Afzal; Fredrik Svensson; Mike A. Firth; Ian P. Barrett; Ola Engkvist; Andreas Bender 002 (Bioinform., 2018)

Maximizing gain in high-throughput screening using conformal prediction. - Fredrik Svensson; Avid M. Afzal; Ulf Norinder; Andreas Bender 002 (J. Cheminformatics, 2018)

Comparison of Scaling Methods to Obtain Calibrated Probabilities of Activity for Protein-Ligand Predictions. - Lewis H. Mervin; Avid M. Afzal; Ola Engkvist; Andreas Bender 002 (J. Chem. Inf. Model., 2020)

Probabilistic Random Forest improves bioactivity predictions close to the classification threshold by taking into account experimental uncertainty. - Lewis H. Mervin; Maria-Anna Trapotsi; Avid M. Afzal; Ian P. Barrett; Andreas Bender 002; Ola Engkvist (J. Cheminformatics, 2021)

Comparison of Chemical Structure and Cell Morphology Information for Multitask Bioactivity Predictions. - Maria-Anna Trapotsi; Lewis H. Mervin; Avid M. Afzal; Noé Sturm; Ola Engkvist; Ian P. Barrett; Andreas Bender 002 (J. Chem. Inf. Model., 2021)