PROFbval: predict flexible and rigid residues in proteins. - Avner Schlessinger; Guy Yachdav; Burkhard Rost (Bioinform., 2006)

Epitome: database of structure-inferred antigenic epitopes. - Avner Schlessinger; Yanay Ofran; Guy Yachdav; Burkhard Rost (Nucleic Acids Res., 2006)

Natively unstructured regions in proteins identified from contact predictions. - Avner Schlessinger; Marco Punta; Burkhard Rost (Bioinform., 2007)

Natively Unstructured Loops Differ from Other Loops. - Avner Schlessinger; Jinfeng Liu 003; Burkhard Rost (PLoS Comput. Biol., 2007)

Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be. - Christian Schaefer; Avner Schlessinger; Burkhard Rost (Bioinform., 2010)

ModBase, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Benjamin M. Webb; David T. Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C. Meng; Eric F. Pettersen; Conrad C. Huang; Ruchira S. Datta; Parthasarathy Sampathkumar; et al. (Nucleic Acids Res., 2011)

PredictProtein - an open resource for online prediction of protein structural and functional features. - Guy Yachdav; Edda Kloppmann; László Kaján; Maximilian Hecht; Tatyana Goldberg; Tobias Hamp; Peter Hönigschmid; Andrea Schafferhans; Manfred Roos; Michael Bernhofer; Lothar Richter; Haim Ashkenazy; et al. (Nucleic Acids Res., 2014)

Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening. - Claire Colas; Christof Grewer; Nicholas James Otte; Armanda Gameiro; Thomas Albers; Kurnvir Singh; Helen Shere; Massimiliano Bonomi; Jeff Holst; Avner Schlessinger (PLoS Comput. Biol., 2015)

GEN3VA: aggregation and analysis of gene expression signatures from related studies. - Gregory W. Gundersen; Kathleen M. Jagodnik; Holly Woodland; Nicolas F. Fernandez; Kevin Sani; Anders B. Dohlman; Peter Man-Un Ung; Caroline D. Monteiro; Avner Schlessinger; Avi Ma'ayan (BMC Bioinform., 2016)

KinaMetrix: a web resource to investigate kinase conformations and inhibitor space. - Rayees Rahman; Peter Man-Un Ung; Avner Schlessinger (Nucleic Acids Res., 2019)

Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network. - Peter M. U. Ung; Masahiro Sonoshita; Alex P. Scopton; Arvin C. Dar; Ross L. Cagan; Avner Schlessinger (PLoS Comput. Biol., 2019)

PredictProtein - Predicting Protein Structure and Function for 29 Years. - Michael Bernhofer; Christian Dallago; Timothy Karl; Venkata P. Satagopam; Michael Heinzinger; Maria Littmann; Tobias Olenyi; Jiajun Qiu; Konstantin Schütze; Guy Yachdav; Haim Ashkenazy; Nir Ben-Tal; et al. (Nucleic Acids Res., 2021)

Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge. - Zhaoping Xiong; Minji Jeon; Robert J. Allaway; Jaewoo Kang; Donghyeon Park; Jinhyuk Lee; Hwisang Jeon; Miyoung Ko; Hualiang Jiang; Mingyue Zheng; Aik Choon Tan; Xindi Guo; et al. (PLoS Comput. Biol., 2021)

Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues. - Nicole Zatorski; David Stein 003; Rayees Rahman; Ravi Iyengar; Avner Schlessinger (Database J. Biol. Databases Curation, 2022)

A comprehensive exploration of the druggable conformational space of protein kinases using AI-predicted structures. - Noah B. Herrington; Yan Chak Li; David Stein 003; Gaurav Pandey; Avner Schlessinger (PLoS Comput. Biol., 2024)