Representation of amino acids as five-bit or three-bit patterns for filtering protein databases. - Avril Coghlan; Dónall A. Mac Dónaill; Nigel H. Buttimore (Bioinform., 2001)

TreeFam: a curated database of phylogenetic trees of animal gene families. - Heng Li 002; Avril Coghlan; Jue Ruan; Lachlan James M. Coin; Jean-Karim Hériché; Lara Osmotherly; Ruiqiang Li; Tao Liu; Zhang Zhang 002; Lars Bolund; Gane Ka-Shu Wong; Wei-Mou Zheng; et al. (Nucleic Acids Res., 2006)

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure. - Avril Coghlan; Richard Durbin (Bioinform., 2007)

nGASP - the nematode genome annotation assessment project. - Avril Coghlan; Tristan J. Fiedler; Sheldon J. McKay; Paul Flicek; Todd W. Harris; Darin Blasiar; Lincoln D. Stein (BMC Bioinform., 2008)

TreeFam: 2008 Update. - Jue Ruan; Heng Li 002; Zhongzhong Chen; Avril Coghlan; Lachlan James M. Coin; Yiran Guo; Jean-Karim Hériché; Yafeng Hu; Karsten Kristiansen; Ruiqiang Li; Tao Liu; Alan Moses; et al. (Nucleic Acids Res., 2008)