SIEGE: Smoking Induced Epithelial Gene Expression Database. - Vishal Shah; Sriram Sridhar 002; Jennifer E. Beane; Jerome S. Brody; Avrum Spira (Nucleic Acids Res., 2005)

Discovering biological connections between experimental conditions based on common patterns of differential gene expression. - Adam C. Gower; Avrum Spira; Marc E. Lenburg (BMC Bioinform., 2011)

MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis. - Seungyeul Yoo; Tao Huang; Joshua D. Campbell; Eunjee Lee; Zhidong Tu; Mark W. Geraci; Charles A. Powell; Eric E. Schadt; Avrum Spira; Jun Zhu (PLoS Comput. Biol., 2014)