Efficient algorithms for shape and pattern matching. - Axel Mosig (2003)

Approximately matching polygonal curves with respect to the Fre'chet distance. - Axel Mosig; Michael Clausen (Comput. Geom., 2005)

Evolutionary patterns of non-coding RNAs. - Athanasius F. Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L. Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J. Prohaska; Bärbel M. R. Stadler; Peter F. Stadler; et al. (Theory Biosci., 2005)

Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs. - Axel Mosig; Ivo L. Hofacker; Peter F. Stadler (German Conference on Bioinformatics, 2006)

Fragrep: An Efficient Search Tool for Fragmented Patterns in Genomic Sequences. - Axel Mosig; Katrin Sameith; Peter F. Stadler (Genom. Proteom. Bioinform., 2006)

Tanimoto's Best Barbecue: Discovering Regulatory Modules using Tanimoto Scores. - Axel Mosig; Peter Menzel; Peter F. Stadler (German Conference on Bioinformatics, 2007)

Homology Search with Fragmented Nucleic Acid Sequence Patterns. - Axel Mosig; Julian J.-L. Chen; Peter F. Stadler (WABI, 2007)

U7 snRNAs: A Computational Survey. - Manja Marz; Axel Mosig; Bärbel M. R. Stadler; Peter F. Stadler (Genom. Proteom. Bioinform., 2007)

Evolution of the vertebrate Y RNA cluster. - Axel Mosig; Guofeng Meng; Bärbel M. R. Stadler; Peter F. Stadler (Theory Biosci., 2007)

Cell Counting for In Vivo Flow Cytometer Signals Using Wavelet-Based Dynamic Peak Picking. - David Damm; Chaofeng Wang; Xunbin Wei; Axel Mosig (BMEI, 2009)

Tracking cells in Life Cell Imaging videos using topological alignments. - Axel Mosig; Stefan Jäger 001; Chaofeng Wang; Sumit Kumar Nath; Ilker Ersoy; Kannappan Palaniappan; Su-Shing Chen (Algorithms Mol. Biol., 2009)

Discovering cis-regulatory modules by optimizing barbecues. - Axel Mosig; Türker Bíyíkoglu; Sonja J. Prohaska; Peter F. Stadler (Discret. Appl. Math., 2009)

A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. - Guofeng Meng; Axel Mosig; Martin Vingron (BMC Bioinform., 2010)

Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological Images. - Hang Xiao; Melvin Zhang; Axel Mosig; Hon Wai Leong (WABI, 2011)

Ct3d: tracking microglia motility in 3D using a novel cosegmentation approach. - Hang Xiao; Ying Li 006; Jiulin Du; Axel Mosig (Bioinform., 2011)

Similarity maps and hierarchical clustering for annotating FT-IR spectral images. - Qiaoyong Zhong; Chen Yang; Frederik Großerüschkamp; Angela Kallenbach-Thieltges; Peter Serocka; Klaus Gerwert; Axel Mosig (BMC Bioinform., 2013)

Identifying minimally redundant wavenumbers for vibrational microspectroscopic image analysis. - Qiaoyong Zhong; Daniel Niedieker; Dennis Petersen; Klaus Gerwert; Axel Mosig (ICNC, 2014)

Fully automated registration of vibrational microspectroscopic images in histologically stained tissue sections. - Chen Yang; Daniel Niedieker; Frederik Großerüschkamp; Melanie Horn; Andrea Tannapfel; Angela Kallenbach-Thieltges; Klaus Gerwert; Axel Mosig (BMC Bioinform., 2015)

Poster abstracts of GCB 2015. - Martin Eisenacher; Jörg Rahnenführer; Axel Mosig; Sven Rahmann (PeerJ Prepr., 2015)

Invited presentations, junior research groups and research highlights at GCB 2015. - Axel Mosig; Jörg Rahnenführer; Martin Eisenacher; Sven Rahmann (PeerJ Prepr., 2015)

Deep representation learning for domain adaptable classification of infrared spectral imaging data. - Arne P. Raulf; Joshua Butke; Claus Küpper; Frederik Großerüschkamp; Klaus Gerwert; Axel Mosig (Bioinform., 2020)

Deep Neural Networks for the Correction of Mie Scattering in Fourier-Transformed Infrared Spectra of Biological Samples. - Arne P. Raulf; Joshua Butke; Lukas Menzen; Claus Küpper; Frederik Großerüschkamp; Klaus Gerwert; Axel Mosig (CoRR, 2020)

End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma. - Joshua Butke; Tatjana Frick; Florian Roghmann; Samir F. El-Mashtoly; Klaus Gerwert; Axel Mosig (COMPAY@MICCAI, 2021)

SmoothLRP: Smoothing LRP by Averaging over Stochastic Input Variations. - Arne P. Raulf; Sina Däubener; Ben Hack; Axel Mosig; Asja Fischer (ESANN, 2021)

Shape decomposition algorithms for laser capture microdissection. - Leonie Selbach; Tobias Kowalski; Klaus Gerwert; Maike Buchin; Axel Mosig (Algorithms Mol. Biol., 2021)

A framework for falsifiable explanations of machine learning models with an application in computational pathology. - David Schuhmacher; Stephanie Schörner; Claus Küpper; Frederik Großerüschkamp; Carlo Sternemann; Celine Lugnier; Anna-Lena Kraeft; Hendrik Jütte; Andrea Tannapfel; Anke Reinacher-Schick; Klaus Gerwert; Axel Mosig (Medical Image Anal., 2022)

Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators. - Vivian B. Brandenburg; Franz Narberhaus; Axel Mosig (PLoS Comput. Biol., 2022)

A Patch-based Student-Teacher Pyramid Matching Approach to Anomaly Detection in 3D Magnetic Resonance Imaging. - Johannes Schwarz; Lena Will; Jörg Wellmer; Axel Mosig (MIDL, 2024)

Put it to the Test: Getting Serious About Explanation in Explainable Artificial Intelligence. - Florian J. Boge; Axel Mosig (Minds Mach., 2025)