NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei. - Axel Poulet; Ignacio Arganda-Carreras; David Legland; Aline V. Probst; Philippe Andrey; Christophe Tatout (Bioinform., 2015)

RT States: systematic annotation of the human genome using cell type-specific replication timing programs. - Axel Poulet; Ben Li; Tristan Dubos; Juan Carlos Rivera-Mulia; David M. Gilbert; Zhaohui S. Qin (Bioinform., 2019)

NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. - Tristan Dubos; Axel Poulet; Geoffrey Thomson; Emilie Péry; Frédéric Chausse; Christophe Tatout; Sophie Desset; Josien C. van Wolfswinkel; Yannick Jacob (BMC Bioinform., 2022)