When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis. - Axel Theorell; Johannes Seiffarth; Alexander Grünberger; Katharina Nöh (Bioinform., 2019)

Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis. - Axel Theorell; Katharina Nöh (Bioinform., 2020)

Microbial Community Decision Making Models in Batch and Chemostat Cultures. - Axel Theorell; Jörg Stelling (CMSB, 2021)

HOPS: high-performance library for (non-)uniform sampling of convex-constrained models. - Johann F. Jadebeck; Axel Theorell; Samuel Leweke; Katharina Nöh (Bioinform., 2021)

PolyRound: polytope rounding for random sampling in metabolic networks. - Axel Theorell; Johann F. Jadebeck; Katharina Nöh; Jörg Stelling (Bioinform., 2022)

Metabolic Networks, Microbial Consortia, and Analogies to Smart Grids. - Axel Theorell; Jörg Stelling (Proc. IEEE, 2022)

Assumptions on decision making and environment can yield multiple steady states in microbial community models. - Axel Theorell; Jörg Stelling (BMC Bioinform., 2023)