YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. - Roland Schwarz 002; Patrick Musch; Axel von Kamp; Bernd Engels; R. Heiner Schirmer; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2005)

Metatool 5.0: fast and flexible elementary modes analysis. - Axel von Kamp; Stefan Schuster (Bioinform., 2006)

Computing paths and cycles in biological interaction graphs. - Steffen Klamt; Axel von Kamp (BMC Bioinform., 2009)

Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. - Regina Samaga; Axel von Kamp; Steffen Klamt (J. Comput. Biol., 2010)

An application programming interface for CellNetAnalyzer. - Steffen Klamt; Axel von Kamp (Biosyst., 2011)

Minimal cut sets in a metabolic network are elementary modes in a dual network. - Kathrin Ballerstein; Axel von Kamp; Steffen Klamt; Utz-Uwe Haus (Bioinform., 2012)

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. - Claudine Chaouiya; Duncan Bérenguier; Sarah M. Keating; Aurélien Naldi; Martijn P. van Iersel; Nicolas Rodriguez 001; Andreas Dräger; Finja Büchel; Thomas Cokelaer; Bryan M. Kowal; Benjamin Wicks; Emanuel J. V. Gonçalves; et al. (BMC Syst. Biol., 2013)

Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks. - Steffen Klamt; Oliver Hädicke; Axel von Kamp (Large-Scale Networks in Engineering and Life Sciences, 2014)

Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. - Axel von Kamp; Steffen Klamt (PLoS Comput. Biol., 2014)

Genome-scale strain designs based on regulatory minimal cut sets. - Radhakrishnan Mahadevan; Axel von Kamp; Steffen Klamt (Bioinform., 2015)

OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. - Oliver Hädicke; Axel von Kamp; Timur Aydogan; Steffen Klamt (PLoS Comput. Biol., 2018)

Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. - Steffen Klamt; Radhakrishnan Mahadevan; Axel von Kamp (BMC Bioinform., 2020)

An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. - Philipp Schneider; Axel von Kamp; Steffen Klamt (PLoS Comput. Biol., 2020)

CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks. - Sven Thiele; Axel von Kamp; Pavlos Stephanos Bekiaris; Philipp Schneider; Steffen Klamt (Bioinform., 2022)

StrainDesign: a comprehensive Python package for computational design of metabolic networks. - Philipp Schneider; Pavlos Stephanos Bekiaris; Axel von Kamp; Steffen Klamt (Bioinform., 2022)

Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysis. - Axel von Kamp; Steffen Klamt (Bioinform., 2023)

Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine. - Steffen Klamt; Jürgen Zanghellini; Axel von Kamp (Briefings Bioinform., 2024)