Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform. - Doruk Bozdag; Ayat Hatem; Ümit V. Çatalyürek (IPDPS Workshops, 2010)

Benchmarking Short Sequence Mapping Tools. - Ayat Hatem; Doruk Bozdag; Ümit V. Çatalyürek (BIBM, 2011)

Microarray vs. RNA-Seq: a comparison for active subnetwork discovery. - Ayat Hatem; Kamer Kaya; Ümit V. Çatalyürek (BCB, 2012)

PRASE: PageRank-based Active Subnetwork Extraction. - Ayat Hatem; Kamer Kaya; Ümit V. Çatalyürek (BCB, 2013)

Benchmarking short sequence mapping tools. - Ayat Hatem; Doruk Bozdag; Amanda E. Toland; Ümit V. Çatalyürek (BMC Bioinform., 2013)

MICA: MicroRNA integration for active module discovery. - Ayat Hatem; Kamer Kaya; Jeffrey D. Parvin; Kun Huang 001; Ümit V. Çatalyürek (BCB, 2015)

Pilot Project to Study the Effectiveness of Job Interview Preparation Workshops. - Ayat Hatem (J. Comput. Sci. Coll., 2023)