Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Ayesha N. Shajahan; Robert Clarke; Li Chen 018 (ICMLA (2), 2012)

Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. - Xi Chen 056; Chen Wang 001; Ayesha N. Shajahan; Rebecca B. Riggins; Robert Clarke; Jianhua Xuan (ISBRA, 2012)

Reconstructing transcriptional regulatory networks by probabilistic network component analysis. - Jinghua Gu; Jianhua Xuan; Xiao Wang 031; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke (BCB, 2013)

A novel statistical approach to identify co-regulatory gene modules. - Xi Chen 056; Jianhua Xuan; Xu Shi; Ayesha N. Shajahan-Haq; Leena Hilakivi-Clarke; Robert Clarke (BIBM, 2013)

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks. - Xu Shi; Jinghua Gu; Xi Chen 056; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (BMC Syst. Biol., 2013)

Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis. - Xi Chen 056; Jianhua Xuan; Chen Wang 001; Ayesha N. Shajahan; Rebecca B. Riggins; Robert Clarke (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments. - Xi Chen 056; Xu Shi; Ayesha N. Shajahan-Haq; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (BIOINFORMATICS, 2014)

BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data. - Xi Chen 056; Xu Shi; Ayesha N. Shajahan; Leena Hilakivi-Clarke; Robert Clarke; Jianhua Xuan (EMBC, 2014)

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method. - Xu Shi; Robert O. Barnes; Li Chen 018; Ayesha N. Shajahan-Haq; Leena Hilakivi-Clarke; Robert Clarke; Yue Joseph Wang; Jianhua Xuan (Bioinform., 2015)

PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification. - Xi Chen 056; Xu Shi; Leena Hilakivi-Clarke; Ayesha N. Shajahan-Haq; Robert Clarke; Jianhua Xuan (Bioinform., 2017)