Automating biomedical literature review for rapid drug discovery: Leveraging GPT-4 to expedite pandemic response. - Jingmei Yang; Kenji C. Walker; Ayse A. Bekar-Cesaretli; Boran Hao; Nahid Bhadelia; Diane Joseph-McCarthy; Ioannis Ch. Paschalidis (Int. J. Medical Informatics, 2024)

Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. - Ayse A. Bekar-Cesaretli; Omeir Khan; Thu Nguyen; Dima Kozakov; Diane Joseph-McCarthy; Sandor Vajda (J. Chem. Inf. Model., 2024)

Impact of Protein Conformational Diversity on Structure-Based Prediction of Druggability. - Ayse A. Bekar-Cesaretli; Shray Vats; Adrian Whitty; Dima Kozakov; Diane Joseph-McCarthy; Sandor Vajda (J. Chem. Inf. Model., 2025)