Efficient Implementation of Stochastic Proximal Point Algorithm for Matrix and Tensor Completion. - Aysegul Bumin; Kejun Huang (EUSIPCO, 2021)

FiT: fiber-based tensor completion for drug repurposing. - Aysegul Bumin; Anna M. Ritz; Donna K. Slonim; Tamer Kahveci; Kejun Huang (BCB, 2022)

Identification of co-existing embeddings of a motif in multilayer networks. - Yuanfang Ren; Aisharjya Sarkar; Aysegul Bumin; Kejun Huang; Pierangelo Veltri; Alin Dobra; Tamer Kahveci (BCB, 2022)

Stochastic Douglas-Rachford Splitting for Regularized Empirical Risk Minimization: Convergence, Mini-batch, and Implementation. - Aysegul Bumin; Kejun Huang (Trans. Mach. Learn. Res., 2022)

Vulture: VULnerabilities in impuTing drUg REsistance. - Aysegul Bumin; Megan Shah; Kejun Huang; Tamer Kahveci (BCB, 2023)

PartialFibers: An Efficient Method for Predicting Drug-Drug Interactions. - Aysegul Bumin; Kejun Huang; Tamer Kahveci (ICCABS, 2023)

Transformers in Healthcare: A Survey. - Subhash Nerella; Sabyasachi Bandyopadhyay; Jiaqing Zhang; Miguel Contreras; Scott Siegel; Aysegul Bumin; Brandon Silva; Jessica Sena; Benjamin Shickel; Azra Bihorac; Kia Khezeli; Parisa Rashidi (CoRR, 2023)

RETSim: Resilient and Efficient Text Similarity. - Marina Zhang; Owen S. Vallis; Aysegul Bumin; Tanay Vakharia; Elie Bursztein (ICLR, 2024)

Transformers and large language models in healthcare: A review. - Subhash Nerella; Sabyasachi Bandyopadhyay; Jiaqing Zhang; Miguel Contreras; Scott Siegel; Aysegul Bumin; Brandon Silva; Jessica Sena; Benjamin Shickel; Azra Bihorac; Kia Khezeli; Parisa Rashidi (Artif. Intell. Medicine, 2024)