Robust unmixing of tumor states in array comparative genomic hybridization data. - David Tolliver; Charalampos E. Tsourakakis; Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (Bioinform., 2010)

Inference of tumor phylogenies from genomic assays on heterogeneous samples. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (BCB, 2011)

Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (ISBRA, 2012)

Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Reference-free inference of tumor phylogenies from single-cell sequencing data. - Ayshwarya Subramanian; Russell Schwartz (ICCABS, 2014)

Multivariable association discovery in population-scale meta-omics studies. - Himel Mallick; Ali Rahnavard; Lauren J. McIver; Siyuan Ma; Yancong Zhang; Long H. Nguyen; Timothy L. Tickle; George Weingart; Boyu Ren; Emma H. Schwager; Suvo Chatterjee; Kelsey N. Thompson; et al. (PLoS Comput. Biol., 2021)