Molecular Dynamics At a Constant pH. - John E. Mertz; B. Montgomery Pettitt (Int. J. High Perform. Comput. Appl., 1994)

The scaling of molecular dynamics on the KSR1. - Robert Haacke; B. Montgomery Pettitt (HICSS (5), 1995)

Large scale distributed data repository: design of a molecular dynamics trajectory database. - Michael Feig; Matin Abdullah; S. Lennart Johnsson; B. Montgomery Pettitt (Future Gener. Comput. Syst., 1999)

Numerical simulation of the sedimentation of a tripole-like body in an incompressible viscous fluid. - Lorenzo Héctor Juárez; Roland Glowinski; B. Montgomery Pettitt (Appl. Math. Lett., 2002)

Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach. - Yuriy Fofanov; B. Montgomery Pettitt (J. Biomed. Informatics, 2002)

Using Statistical Properties of Short Subsequences in Microbial Identification. - Sergei Chumakov; Catherine Putonti; B. Montgomery Pettitt; George E. Fox; Richard C. Willson; Yuriy Fofanov (METMBS, 2004)

How independent are the appearances of n-mers in different genomes? - Yuriy Fofanov; Yi Luo; Charles Katili; Jim Wang; Yuri Belosludtsev; Thomas Powdrill; Chetan Belapurkar; Viacheslav Fofanov; Tong-Bin Li; Sergei Chumakov; B. Montgomery Pettitt (Bioinform., 2004)

Massively parallel implementation of a fast multipole method for distributed memory machines. - Jakub Kurzak; B. Montgomery Pettitt (J. Parallel Distributed Comput., 2005)

Automatic Generation of FFT for Translations of Multipole Expansions in Spherical Harmonics. - Jakub Kurzak; Dragan Mirkovic; B. Montgomery Pettitt; S. Lennart Johnsson (Int. J. High Perform. Comput. Appl., 2008)

A model for structure and thermodynamics of ssDNA and dsDNA near a surface: A coarse grained approach. - J. Ambia-Garrido; Arnold Vainrub; B. Montgomery Pettitt (Comput. Phys. Commun., 2010)

Electrostatic solvation free energy of amino acid side chain analogs: Implications for the validity of electrostatic linear response in water. - Bin Lin; B. Montgomery Pettitt (J. Comput. Chem., 2011)

Force field-dependent solution properties of glycine oligomers. - Justin A. Drake; B. Montgomery Pettitt (J. Comput. Chem., 2015)

Phage-like packing structures with mean field sequence dependence. - Christopher G. Myers; B. Montgomery Pettitt (J. Comput. Chem., 2017)