Bayesian imaging using Good's roughness measure-implementation on a massively parallel processor. - Badrinath Roysam; Jay A. Shrauner; Michael I. Miller (ICASSP, 1988)

A unified approach for hierarchical imaging based on joint hypothesis testing and parameter estimation. - Badrinath Roysam; Michael I. Miller (ICASSP, 1989)

Stochastic representation of memoryless Boolean functions: application to boundary estimation at low contrast. - Badrinath Roysam; Michael I. Miller (ICASSP, 1990)

Representing and computing regular languages on massively parallel networks. - Michael I. Miller; Badrinath Roysam; Kurt R. Smith; Joseph A. O'Sullivan (IEEE Trans. Neural Networks, 1991)

Combining stochastic and syntactic processing with analog computation methods. - Badrinath Roysam; Michael I. Miller (Digit. Signal Process., 1992)

A genetic algorithm for intelligent imaging from quantum-limited data. - Anoop K. Bhattacharjya; Douglas E. Becker; Badrinath Roysam (Signal Process., 1992)

Hierarchically structured unit-simplex transformations for parallel distributed optimization problems. - Badrinath Roysam; Anoop K. Bhattacharjya (IEEE Trans. Neural Networks, 1992)

Improving RAID-5 Performance by Un-striping Moderate-Sized Files. - Ronald K. McMurdy; Badrinath Roysam (ICPP (2), 1993)

Computational Vision (Harry Wechsler). - Badrinath Roysam (SIAM Rev., 1993)

Joint solution of low, intermediate, and high-level vision tasks by evolutionary optimization: Application to computer vision at low SNR. - Anoop K. Bhattacharjya; Badrinath Roysam (IEEE Trans. Neural Networks, 1994)

An improved watershed algorithm for counting objects in noisy, anisotropic 3-D biological images. - Hakan Ancin; Thomas E. Dufresne; Gregg M. Ridder; James N. Turner; Badrinath Roysam (ICIP (3), 1995)

Real-time image processing algorithms for an automated retinal laser surgery system. - Douglas E. Becker; James N. Turner; Howard L. Tanenbaum; Badrinath Roysam (ICIP, 1995)

Adaptive 3-D segmentation algorithms for microscope images using local in-focus, and contrast features: application to Pap smears. - Robert W. Mackin Jr.; Badrinath Roysam; James N. Turner (ICIP (3), 1995)

Automated image analysis technologies for biological 3D light microscopy. - James N. Turner; Hakan Ancin; Douglas E. Becker; Donald H. Szarowski; Maria Holmes; Nate O'Connor; Michael Wang; Timothy Holmes; Badrinath Roysam (Int. J. Imaging Syst. Technol., 1997)

Image processing algorithms for retinal montage synthesis, mapping, and real-time location determination. - Douglas E. Becker; Ali Can; James N. Turner; Howard L. Tanenbaum; Badrinath Roysam (IEEE Trans. Biomed. Eng., 1998)

Robust Hierarchical Algorithm for Constructing a Mosaic from Images of the Curved Human Retina. - Charles V. Stewart; Badrinath Roysam; Ali Can (CVPR, 1999)

Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms. - Ali Can; Hong Shen 003; James N. Turner; Howard L. Tanenbaum; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 1999)

A Feature-Based Technique for Joint, Linear Estimation of High-Order Image-to-Mosaic Transformations: Application to Mosaicing the Curved Human Retina. - Ali Can; Charles V. Stewart; Badrinath Roysam; Howard L. Tanenbaum (CVPR, 2000)

Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Laser Retinal Surgery. - Hong Shen 003; Charles V. Stewart; Badrinath Roysam; Gang Lin; Howard L. Tanenbaum (CVPR (1), 2001)

Optimal scheduling of tracing computations for real-time vascular landmark extraction from retinal fundus images. - Hong Shen 003; Badrinath Roysam; Charles V. Stewart; James N. Turner; Howard L. Tanenbaum (IEEE Trans. Inf. Technol. Biomed., 2001)

Covariance-driven retinal image registration initialized from small sets of landmark correspondences. - Chia-Ling Tsai; Charles V. Stewart; Badrinath Roysam; Howard L. Tanenbaum (ISBI, 2002)

A Feature-Based, Robust, Hierarchical Algorithm for Registering Pairs of Images of the Curved Human Retina. - Ali Can; Charles V. Stewart; Badrinath Roysam; Howard L. Tanenbaum (IEEE Trans. Pattern Anal. Mach. Intell., 2002)

A Feature-Based Technique for Joint Linear Estimation of High-Order Image-to-Mosaic Transformations: Mosaicing the Curved Human Retina. - Ali Can; Charles V. Stewart; Badrinath Roysam; Howard L. Tanenbaum (IEEE Trans. Pattern Anal. Mach. Intell., 2002)

Rapid automated three-dimensional tracing of neurons from confocal image stacks. - Khalid A. Al-Kofahi; Sharie Lasek; Donald H. Szarowski; Christopher J. Pace; George Nagy; James N. Turner; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2002)

Computer Vision Algorithms for Quantifying the Growth and Behavior of Neurons Cultured on Nanofabricated Surfaces. - Muhammad-Amri Abdul-Karim; Khalid A. Al-Kofahi; Badrinath Roysam; Natalie M. Dowell-Mesfin; Rifat J. Hussain; William Shain; James N. Turner (CVPR Workshops, 2003)

Disease-Oriented Evaluation of Dual-Bootstrap Retinal Image Registration. - Chia-Ling Tsai; Anna Majerovics; Charles V. Stewart; Badrinath Roysam (MICCAI (1), 2003)

Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Online Retinal Image Registration. - Hong Shen 003; Charles V. Stewart; Badrinath Roysam; Gang Lin; Howard L. Tanenbaum (IEEE Trans. Pattern Anal. Mach. Intell., 2003)

Median-based robust algorithms for tracing neurons from noisy confocal microscope images. - Khalid A. Al-Kofahi; Ali Can; Sharie Lasek; Donald H. Szarowski; Natalie M. Dowell-Mesfin; William Shain; James N. Turner; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2003)

The Dual Bootstrap Iterative Closest Point Algorithm with Application to Retinal Image Registration. - Charles V. Stewart; Chia-Ling Tsai; Badrinath Roysam (IEEE Trans. Medical Imaging, 2003)

Predictive scheduling algorithms for real-time feature extraction and spatial referencing: application to retinal image sequences. - Gang Lin; Charles V. Stewart; Badrinath Roysam; Kenneth Fritzsche; Gehua Yang; Howard L. Tanenbaum (IEEE Trans. Biomed. Eng., 2004)

Robust model-based vasculature detection in noisy biomedical images. - Vijay Mahadevan; Harihar Narasimha-Iyer; Badrinath Roysam; Howard L. Tanenbaum (IEEE Trans. Inf. Technol. Biomed., 2004)

Model-Based Method for Improving the Accuracy and Repeatability of Estimating Vascular Bifurcations and Crossovers From Retinal Fundus Images. - Chia-Ling Tsai; Charles V. Stewart; Howard L. Tanenbaum; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2004)

Efficient Migration of Complex Off-Line Computer Vision Software to Real-Time System Implementation on Generic Computer Hardware. - James Alexander Tyrrell; Justin M. LaPre; Christopher D. Carothers; Badrinath Roysam; Charles V. Stewart (IEEE Trans. Inf. Technol. Biomed., 2004)

Complexity analysis of angiogenesis vasculature. - Vijay Mahadevan; James Alexander Tyrrell; Ricky T. Tong; Edward B. Brown; Rakesh K. Jain; Badrinath Roysam (Image Processing, 2005)

Automatic Selection of Parameters for Vessel/Neurite Segmentation Algorithms. - Muhammad-Amri Abdul-Karim; Badrinath Roysam; Natalie M. Dowell-Mesfin; A. Jeromin; Murat Yuksel; Shivkumar Kalyanaraman (IEEE Trans. Image Process., 2005)

Image change detection algorithms: a systematic survey. - Richard J. Radke; Srinivas Andra; Omar Al-Kofahi; Badrinath Roysam (IEEE Trans. Image Process., 2005)

Automated Change Analysis From Fluorescein Angiograms for Monitoring Wet Macular Degeneration. - Harihar Narasimha-Iyer; Ali Can; Badrinath Roysam; Jeffrey Stern (EMBC, 2006)

Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images. - Dirk Ryan Padfield; Jens Rittscher; Thomas Sebastian; Nick Thomas; Badrinath Roysam (ISBI, 2006)

Robust 3-D modeling of tumor microvasculature using superellipsoids. - James Alexander Tyrrell; Badrinath Roysam; Emmanuelle di Tomaso; Ricky Tong; Edward B. Brown; Rakesh K. Jain (ISBI, 2006)

Automated semantic analysis of changes in image sequences of neurons in culture. - Omar Al-Kofahi; Richard J. Radke; Badrinath Roysam; Gary Banker (IEEE Trans. Biomed. Eng., 2006)

Robust detection and classification of longitudinal changes in color retinal fundus images for monitoring diabetic retinopathy. - Harihar Narasimha-Iyer; Ali Can; Badrinath Roysam; Charles V. Stewart; Howard L. Tanenbaum; Anna Majerovics; Hanumant Singh (IEEE Trans. Biomed. Eng., 2006)

Automated 3-D Quantification of Brain Tissue at tThe Cellular Scale from Multi-Parameter Confocal Microscopy Images. - Gang Lin; Yousef Al-Kofahi; James Alexander Tyrrell; Christopher Björnsson; William Shain; Badrinath Roysam (ISBI, 2007)

Automatic Identification of Retinal Arteries and Veins From Dual-Wavelength Images Using Structural and Functional Features. - Harihar Narasimha-Iyer; James M. Beach; Bahram Khoobehi; Badrinath Roysam (IEEE Trans. Biomed. Eng., 2007)

Integrated Analysis of Vascular and Nonvascular Changes From Color Retinal Fundus Image Sequences. - Harihar Narasimha-Iyer; Ali Can; Badrinath Roysam; Howard L. Tanenbaum; Anna Majerovics (IEEE Trans. Biomed. Eng., 2007)

A Computational Model for C. elegans Locomotory Behavior: Application to Multiworm Tracking. - Nicolas Roussel 002; Christine A. Morton; Fern P. Finger; Badrinath Roysam (IEEE Trans. Biomed. Eng., 2007)

Robust 3-D Modeling of Vasculature Imagery Using Superellipsoids. - James Alexander Tyrrell; Emmanuelle di Tomaso; Daniel Fuja; Ricky Tong; Kevin Kozak; Rakesh K. Jain; Badrinath Roysam (IEEE Trans. Medical Imaging, 2007)

Methods for monitoring cellular motion and function. - Dirk Ryan Padfield; Jens Rittscher; Badrinath Roysam (ACSCC, 2008)

Automatic summarization of changes in image sequences using algorithmic information theory. - Andrew R. Cohen; Christopher Björnsson; Ying Chen; Gary Banker; Ena Ladi; Ellen Robey; Sally Temple; Badrinath Roysam (ISBI, 2008)

Spatio-temporal cell segmentation and tracking for automated screening. - Dirk Ryan Padfield; Jens Rittscher; Badrinath Roysam (ISBI, 2008)

Improved Detection of the Central Reflex in Retinal Vessels Using a Generalized Dual-Gaussian Model and Robust Hypothesis Testing. - Harihar Narasimha-Iyer; Vijay Mahadevan; James M. Beach; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2008)

Automated Retinal Image Analysis Over the Internet. - Chia-Ling Tsai; Benjamin Madore; Matthew J. Leotta; Michal Sofka; Gehua Yang; Anna Majerovics; Howard L. Tanenbaum; Charles V. Stewart; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2008)

Coupled Minimum-Cost Flow Cell Tracking. - Dirk Ryan Padfield; Jens Rittscher; Badrinath Roysam (IPMI, 2009)

Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. - Dirk Ryan Padfield; Jens Rittscher; Nick Thomas; Badrinath Roysam (Medical Image Anal., 2009)

The Central Role of Neuroinformatics in the National Academy of Engineering's Grandest Challenge: Reverse Engineer the Brain. - Badrinath Roysam; William Shain; Giorgio A. Ascoli (Neuroinformatics, 2009)

MDL Constrained 3-D Grayscale Skeletonization Algorithm for Automated Extraction of Dendrites and Spines from Fluorescence Confocal Images. - Xiaosong Yuan; Joshua T. Trachtenberg; Steve M. Potter; Badrinath Roysam (Neuroinformatics, 2009)

Automatic Summarization of Changes in Biological Image Sequences Using Algorithmic Information Theory. - Andrew R. Cohen; Christopher Björnsson; Sally Temple; Gary Banker; Badrinath Roysam (IEEE Trans. Pattern Anal. Mach. Intell., 2009)

Interest Points for Hyperspectral Image Data. - Amit Mukherjee; Miguel Velez-Reyes; Badrinath Roysam (IEEE Trans. Geosci. Remote. Sens., 2009)

5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments. - Arunachalam Narayanaswamy; Ena Ladi; Yousef Al-Kofahi; Ying Chen; Christopher D. Carothers; Ellen Robey; Badrinath Roysam (ISBI, 2010)

Joint tracking and locomotion state recognition of C. elegans from time-lapse image sequences. - Yu Wang 032; Badrinath Roysam (ISBI, 2010)

Automatic and Reliable Extraction of Dendrite Backbone from Optical Microscopy Images. - Liang Xiao 001; Xiaosong Yuan; Zack Galbreath; Badrinath Roysam (LSMS/ICSEE, 2010)

A vector SIFT operator for interest point detection in hyperspectral imagery. - Leidy P. Dorado-Muñoz; Miguel Velez-Reyes; Amit Mukherjee; Badrinath Roysam (WHISPERS, 2010)

Image Variational Denoising Using Gradient Fidelity on Curvelet Shrinkage. - Liang Xiao 001; Lili Huang; Badrinath Roysam (EURASIP J. Adv. Signal Process., 2010)

Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images. - Yousef Al-Kofahi; Wiem Lassoued; William Lee; Badrinath Roysam (IEEE Trans. Biomed. Eng., 2010)

Robust Adaptive 3-D Segmentation of Vessel Laminae From Fluorescence Confocal Microscope Images and Parallel GPU Implementation. - Arunachalam Narayanaswamy; Saritha Dwarakapuram; Christopher Björnsson; Barbara Cutler; William Shain; Badrinath Roysam (IEEE Trans. Medical Imaging, 2010)

Metrics for comparing explicit representations of interconnected biological networks. - David Mayerich; Christopher Björnsson; Jonothan Taylor; Badrinath Roysam (BioVis, 2011)

Novel 4-D Open-Curve Active Contour and curve completion approach for automated tree structure extraction. - Yu Wang 032; Arunachalam Narayanaswamy; Badrinath Roysam (CVPR, 2011)

A rapid 2-D centerline extraction method based on tensor voting. - Zhe Leng; Julie R. Korenberg; Badri Roysam; Tolga Tasdizen (ISBI, 2011)

Quantitative biological studies enabled by robust cell tracking. - Dirk Ryan Padfield; Jens Rittscher; Badrinath Roysam (ISBI, 2011)

Automated kymograph analysis for profiling axonal transport of secretory granules. - Amit Mukherjee; Brian Jenkins; Cheng Fang; Richard J. Radke; Gary Banker; Badrinath Roysam (Medical Image Anal., 2011)

Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis. - Dirk Ryan Padfield; Jens Rittscher; Badrinath Roysam (Medical Image Anal., 2011)

The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions. - Jonathan Luisi; Arunachalam Narayanaswamy; Zachary Galbreath; Badrinath Roysam (Neuroinformatics, 2011)

3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors. - Arunachalam Narayanaswamy; Yu Wang 032; Badrinath Roysam (Neuroinformatics, 2011)

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake. - Yu Wang 032; Arunachalam Narayanaswamy; Chia-Ling Tsai; Badrinath Roysam (Neuroinformatics, 2011)

Multi-temporal Globally-Optimal Dense 3-D Cell Segmentation and Tracking from Multi-photon Time-Lapse Movies of Live Tissue Microenvironments. - Arunachalam Narayanaswamy; Amine Merouane; Antonio Peixoto; Ena Ladi; Paul Herzmark; Ulrich H. von Andrian; Ellen Robey; Badrinath Roysam (STIA, 2012)

NetMets: software for quantifying and visualizing errors in biological network segmentation. - David Mayerich; Christopher Björnsson; Jonothan Taylor; Badrinath Roysam (BMC Bioinform., 2012)

Axonal transport analysis using Multitemporal Association Tracking. - Mark R. Winter; Cheng Fang; Gary Banker; Badrinath Roysam; Andrew R. Cohen (Int. J. Comput. Biol. Drug Des., 2012)

A Vector SIFT Detector for Interest Point Detection in Hyperspectral Imagery. - Leidy P. Dorado-Muñoz; Miguel Velez-Reyes; Amit Mukherjee; Badrinath Roysam (IEEE Trans. Geosci. Remote. Sens., 2012)

Quantitative profiling of microglia populations using harmonic co-clustering of arbor morphology measurements. - Yanbin Lu; Kristen Trett; William Shain; Lawrence Carin; Ronald R. Coifman; Badrinath Roysam (ISBI, 2013)

Unsupervised inference of arbor morphology progression for microglia from confocal microscope images. - Yan Xu; Michalis A. Savelonas; Peng Qiu; Kristen Trett; William Shain; Badrinath Roysam (ISBI, 2013)

Automated image computing reshapes computational neuroscience. - Hanchuan Peng; Badrinath Roysam; Giorgio A. Ascoli (BMC Bioinform., 2013)

Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors. - Murad Megjhani; Nicolas Rey-Villamizar; Amine Merouane; Yanbin Lu; Amit Mukherjee; Kristen Trett; Peter H. J. Chong; Carolyn Harris; William Shain; Badrinath Roysam (Bioinform., 2015)

Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING). - Amine Merouane; Nicolas Rey-Villamizar; Yanbin Lu; Ivan Liadi; Gabrielle Romain; Jennifer Lu; Harjeet Singh; Laurence J. N. Cooper; Navin Varadarajan; Badrinath Roysam (Bioinform., 2015)

Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure. - Yanbin Lu; Lawrence Carin; Ronald R. Coifman; William Shain; Badrinath Roysam (Neuroinformatics, 2015)

Unsupervised Discovery of Subspace Trends. - Yan Xu; Peng Qiu; Badrinath Roysam (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

Unsupervised Profiling of Microglial Arbor Morphologies and Distribution Using a Nonparametric Bayesian Approach. - Yan Xu; Murad Megjhani; Kristen Trett; William Shain; Badrinath Roysam; Zhu Han 001 (IEEE J. Sel. Top. Signal Process., 2016)

Blind Quality Metric for Multidistortion Images Based on Cartoon and Texture Decomposition. - Feiyan Zhang; Badri Roysam (IEEE Signal Process. Lett., 2016)

Morphologically constrained spectral unmixing by dictionary learning for multiplex fluorescence microscopy. - Murad Megjhani; Pedro Correa de Sampaio; Julienne Leigh Carstens; Raghu Kalluri; Badrinath Roysam (Bioinform., 2017)

Placing Sites on the Edge of Planar Silicon Microelectrodes Enhances Chronic Recording Functionality. - Heui-Chang Lee; Janak Gaire; Badrinath Roysam; Kevin J. Otto (IEEE Trans. Biomed. Eng., 2018)

TIMING 2.0: high-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids. - Hengyang Lu; Jiabing Li; Melisa A. Martinez-Paniagua; Irfan N. Bandey; Amit Amritkar; Harjeet Singh; David Mayerich; Navin Varadarajan; Badrinath Roysam (Bioinform., 2019)

Correction to: Interpretable and Annotation-Efficient Learning for Medical Image Computing. - Jaime S. Cardoso 001; Hien Van Nguyen; Nicholas Heller; Pedro Henriques Abreu; Ivana Isgum; Wilson Silva; Ricardo P. M. Cruz; José Pereira Amorim; Vishal Patel 001; Badri Roysam; S. Kevin Zhou; Steve B. Jiang; et al. (iMIMIC/MIL3ID/LABELS@MICCAI, 2020)

Segmenting Continuous but Sparsely-Labeled Structures in Super-Resolution Microscopy Using Perceptual Grouping. - Jiabing Li; Camille Artur; Jason L. Eriksen; Badrinath Roysam; David Mayerich (MICCAI (5), 2020)

Few Is Enough: Task-Augmented Active Meta-learning for Brain Cell Classification. - Pengyu Yuan; Aryan Mobiny; Jahandar Jahanipour; Xiaoyang Li; Pietro Antonio Cicalese; Badrinath Roysam; Vishal M. Patel; Maric Dragan; Hien Van Nguyen (MICCAI (1), 2020)

Automated Classification of Apoptosis in Phase Contrast Microscopy Using Capsule Network. - Aryan Mobiny; Hengyang Lu; Hien Van Nguyen; Badrinath Roysam; Navin Varadarajan (IEEE Trans. Medical Imaging, 2020)

Student Collaboration Improves Self-Supervised Learning: Dual-Loss Adaptive Masked Autoencoder for Brain Cell Image Analysis. - Son T. Ly; Bai Lin; Hung Q. Vo; Maric Dragan; Badri Roysam; Hien Van Nguyen (CoRR, 2022)

Automated Focus Restoration for High-throughput Phase Contrast Time-lapse Microscopy with De-noising Diffusion Probabilistic Model. - Kwan-Ling Wu; Melisa Montalvo; Prashant Menon; Badrinath Roysam; Navin Varadarajan (BCB, 2023)

Automated detection of apoptotic bodies and cells in label-free time-lapse high-throughput video microscopy using deep convolutional neural networks. - Kwan-Ling Wu; Melisa A. Martinez-Paniagua; Kate Reichel; Prashant Menon; Shravani Deo; Badrinath Roysam; Navin Varadarajan (Bioinform., 2023)

Cellular data extraction from multiplexed brain imaging data using self-supervised Dual-loss Adaptive Masked Autoencoder. - Son T. Ly; Bai Lin; Hung Q. Vo; Dragan Maric; Badrinath Roysam; Hien Van Nguyen (Artif. Intell. Medicine, 2024)

Visual Prompting Based Incremental Learning for Semantic Segmentation of Multiplex Immuno-Flourescence Microscopy Imagery. - Ryan Faulkenberry; Saurabh Prasad; Dragan Maric; Badrinath Roysam (Neuroinformatics, 2024)