Disentangled Long-Read De Bruijn Graphs via Optical Maps. - Bahar Alipanahi; Leena Salmela; Simon J. Puglisi; Martin D. Muggli; Christina Boucher 001 (WABI, 2017)

Recoloring the Colored de Bruijn Graph. - Bahar Alipanahi; Alan Kuhnle; Christina Boucher 001 (SPIRE, 2018)

Building large updatable colored de Bruijn graphs via merging. - Martin D. Muggli; Bahar Alipanahi; Christina Boucher 001 (Bioinform., 2019)

Aligning optical maps to de Bruijn graphs. - Kingshuk Mukherjee; Bahar Alipanahi; Tamer Kahveci; Leena Salmela; Christina Boucher 001 (Bioinform., 2019)

Metagenome SNP calling via read-colored de Bruijn graphs. - Bahar Alipanahi; Martin D. Muggli; Musa Jundi; Noelle R. Noyes; Christina Boucher 001 (Bioinform., 2021)

Succinct dynamic de Bruijn graphs. - Bahar Alipanahi; Alan Kuhnle; Simon J. Puglisi; Leena Salmela; Christina Boucher 001 (Bioinform., 2021)