New scoring schema for finding motifs in DNA Sequences. - Fatemeh Zare-Mirakabad; Hayedeh Ahrabian; Mehdi Sadeghi; Abbas Nowzari-Dalini; Bahram Goliaei (BMC Bioinform., 2009)

Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Bahram Goliaei (IWBBIO, 2014)

Network-based approach reveals Y chromosome influences prostate cancer susceptibility. - Pegah Khosravi; Vahid H. Gazestani; Yazdan Asgari; Brian Law; Mehdi Sadeghi; Bahram Goliaei (Comput. Biol. Medicine, 2014)

Erratum to: Inferring interaction type in gene regulatory networks using co-expression data. - Pegah Khosravi; Vahid H. Gazestani; Leila Pirhaji; Brian Law; Mehdi Sadeghi; Gary D. Bader; Bahram Goliaei (Algorithms Mol. Biol., 2015)

Inferring interaction type in gene regulatory networks using co-expression data. - Pegah Khosravi; Vahid H. Gazestani; Leila Pirhaji; Brian Law; Mehdi Sadeghi; Bahram Goliaei; Gary D. Bader (Algorithms Mol. Biol., 2015)

Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach. - Mohammad-Hadi Foroughmand-Araabi; Bahram Goliaei; Kasra Alishahi; Mehdi Sadeghi; Sama Goliaei (J. Bioinform. Comput. Biol., 2015)

Modeling the probability distribution of the bacterial burst size via a game-theoretic approach. - Seyed Amir Malekpour; Parsa Pakzad; Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Ruzbeh Tusserkani; Bahram Goliaei; Mehdi Sadeghi (J. Bioinform. Comput. Biol., 2018)

Systematic analysis of genes and diseases using PheWAS-Associated networks. - Ali Khosravi; Morteza Kouhsar; Bahram Goliaei; B. Jayaram 001; Ali Masoudi-Nejad (Comput. Biol. Medicine, 2019)

A novel pattern matching algorithm for genomic patterns related to protein motifs. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Bahram Goliaei (J. Bioinform. Comput. Biol., 2020)

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data. - Leila Baghaarabani; Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi; Seyed Peyman Shariatpanahi; Bahram Goliaei (BMC Bioinform., 2021)

A computational model elucidating mechanisms and variability in theta burst stimulation responses. - Mohammadreza Vasheghani Farahani; Seyed Peyman Shariatpanahi; Bahram Goliaei (J. Comput. Neurosci., 2024)

Learning the Fiber Orientation of the Right Ventricle from a Single Electroanatomical Map with Physics-Informed Neural Networks. - Maedeh Chatraie; Efraín Magaña; Peyman Shariatpanahi; Bahram Goliaei; Francisco Sahli Costabal (FIMH (2), 2025)