Meta Analysis of Microarray Data Using Gene Regulation Pathways. - Saira Ali Kazmi; Yoo-Ah Kim; Baikang Pei; Ravi Nori; David W. Rowe; Hsin-Wei Wang; Alan Wong; Dong-Guk Shin (BIBM, 2008)

Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information. - Baikang Pei; David W. Rowe; Dong-Guk Shin (BIBM, 2008)

PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. - Dong-Guk Shin; Seung-Hyun Hong; Pujan Joshi; Ravi Nori; Baikang Pei; Hsin-Wei Wang; Patrick Harrington; Lynn Kuo; Ivo Kalajzic; David W. Rowe (IJCBS, 2009)

Computing Consistency Between Microarray Data and Known Gene Regulation Relationships. - Dong-Guk Shin; Saira Ali Kazmi; Baikang Pei; Yoo-Ah Kim; Jeffrey Maddox; Ravi Nori; Alan Wong; Winfried Krueger; David W. Rowe (IEEE Trans. Inf. Technol. Biomed., 2009)

Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure. - Baikang Pei; Dong-Guk Shin (BIOCOMP, 2010)

Learning Bayesian networks with integration of indirect prior knowledge. - Baikang Pei; David W. Rowe; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2010)

Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models. - Baikang Pei; Dong-Guk Shin (J. Comput. Biol., 2012)

A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. - Pujan Joshi; Baikang Pei; Seung-Hyun Hong; Ivo Kalajzic; Dong-Ju Shin; David W. Rowe; Dong-Guk Shin (BIBM, 2013)

GENCODE reference annotation for the human and mouse genomes. - Adam Frankish; Mark Diekhans; Anne-Maud Ferreira; Rory Johnson; Irwin Jungreis; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; et al. (Nucleic Acids Res., 2019)

GENCODE 2021. - Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; Alexandra Bignell; et al. (Nucleic Acids Res., 2021)