Visualization of K -Tuple Distribution in Procaryote Complete Genomes and Their Randomized Counterparts. - Huimin Xie; Bailin Hao (CSB, 2002)

"spatial-Temporal" Patterns in Prokaryote genomes. - Bailin Hao (Int. J. Bifurc. Chaos, 2002)

Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance. - Bailin Hao; Ji Qi (CSB, 2003)

CVTree: a phylogenetic tree reconstruction tool based on whole genomes. - Ji Qi; Hong Luo; Bailin Hao (Nucleic Acids Res., 2004)

Test Data Sets and Evaluation of Gene Prediction Programs on the Rice Genome. - Heng Li; Jin-Song Liu; Zhao Xu; Jiao Jin; Lin Fang; Lei Gao; Yu-Dong Li; Zi-Xing Xing; Shao-Gen Gao; Tao Liu; Hai-Hong Li; Yan Li; et al. (J. Comput. Sci. Technol., 2005)

Combinatorics from Bacterial Genomes. - Bailin Hao (COCOA, 2007)

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. - Zhao Xu; Bailin Hao (Nucleic Acids Res., 2009)

Jackknife and Bootstrap Tests of the Composition Vector Trees. - Guanghong Zuo; Zhao Xu; Hongjie Yu; Bailin Hao (Genom. Proteom. Bioinform., 2010)

Shigella Strains Are Not Clones of Escherichia coli but Sister Species in the Genus Escherichia. - Guanghong Zuo; Zhao Xu; Bailin Hao (Genom. Proteom. Bioinform., 2013)

On K-peptide length in composition vector phylogeny of prokaryotes. - Guanghong Zuo; Qiang Li; Bailin Hao (Comput. Biol. Chem., 2014)

CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy. - Guanghong Zuo; Bailin Hao (Genom. Proteom. Bioinform., 2015)

LVTree Viewer: An Interactive Display for the All-Species Living Tree Incorporating Automatic Comparison with Prokaryotic Systematics. - Guanghong Zuo; Xiaoyang Zhi; Zhao Xu; Bailin Hao (Genom. Proteom. Bioinform., 2016)

Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree. - Guanghong Zuo; Ji Qi; Bailin Hao (Genom. Proteom. Bioinform., 2018)