Integrated Protein Interaction Networks for 11 Microbes. - Balaji S. Srinivasan; Antal F. Novak; Jason Flannick; Serafim Batzoglou; Harley H. McAdams (RECOMB, 2006)

Current progress in network research: toward reference networks for key model organisms. - Balaji S. Srinivasan; Nigam H. Shah; Jason Flannick; Eduardo Abeliuk; Antal F. Novak; Serafim Batzoglou (Briefings Bioinform., 2007)

Automatic Parameter Learning for Multiple Network Alignment. - Jason Flannick; Antal F. Novak; Chuong B. Do; Balaji S. Srinivasan; Serafim Batzoglou (RECOMB, 2008)

Automatic Parameter Learning for Multiple Local Network Alignment. - Jason Flannick; Antal F. Novak; Chuong B. Do; Balaji S. Srinivasan; Serafim Batzoglou (J. Comput. Biol., 2009)