ModuLand plug-in for Cytoscape: extensively overlapping modules, community centrality and their use in biological networks - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (CoRR, 2011)

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (Bioinform., 2012)

Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal. - Claus Fritzemeier; Daniel Hartleb; Balázs Szappanos; Balázs Papp; Martin J. Lercher (PLoS Comput. Biol., 2017)

Underground metabolism as a rich reservoir for pathway engineering. - Szabolcs Cselgo Kovács; Balázs Szappanos; Roland Tengölics; Richard A. Notebaart; Balázs Papp (Bioinform., 2022)