Hematopoietic cell types: Prototype for a revised cell ontology. - Alexander D. Diehl; Alison Deckhut Augustine; Judith A. Blake; Lindsay G. Cowell; Elizabeth S. Gold; Timothy A. Gondré-Lewis; Anna Maria Masci; Terrence F. Meehan; Penelope A. Morel; Anastasia Nijnik; Bjoern Peters; Bali Pulendran; et al. (J. Biomed. Informatics, 2011)

Predicting Network Activity from High Throughput Metabolomics. - Shuzhao Li; Youngja Park; Sai Duraisingham; Frederick H. Strobel; Nooruddin Khan; Quinlyn A. Soltow; Dean P. Jones; Bali Pulendran (PLoS Comput. Biol., 2013)

Machine Learning for Predicting Vaccine Immunogenicity. - Eva K. Lee; Helder I. Nakaya; Fan Yuan; Troy D. Querec; Greg Burel; Ferdinand H. Pietz; Bernard A. Benecke; Bali Pulendran (Interfaces, 2016)

Cell type discovery and representation in the era of high-content single cell phenotyping. - Trygve E. Bakken; Lindsay G. Cowell; Brian D. Aevermann; Mark Novotny; Rebecca D. Hodge; Jeremy A. Miller; Alexandra Lee; Ivan Chang; Jamison M. McCorrison; Bali Pulendran; Yu Qian; Nicholas J. Schork; et al. (BMC Bioinform., 2017)

ImmuneRegulation: a web-based tool for identifying human immune regulatory elements. - Selim Kalayci; Myvizhi Esai Selvan; Irene Ramos; Chris Cotsapas; Eva Harris; Eun-Young Kim; Ruth R. Montgomery; Gregory A. Poland; Bali Pulendran; John S. Tsang; Robert J. Klein; Zeynep H. Gümüs (Nucleic Acids Res., 2019)