The Meaning and Limitations of Protein Structure Alignments. - Baohong Zhang; Adam Godzik (3DPVT, 2002)

Computational identification of microRNAs and their targets. - Baohong Zhang; Xiaoping Pan; Qinglian Wang; George P. Cobb; Todd A. Anderson 002 (Comput. Biol. Chem., 2006)

In silico identification of microRNAs from expressed sequence tags of three earthworm species. - Ping Gong 001; Fuliang Xie; Baohong Zhang; Edward J. Perkins (BCB, 2010)

Target-align: a tool for plant microRNA target identification. - Fuliang Xie; Baohong Zhang (Bioinform., 2010)

In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species. - Ping Gong 001; Fuliang Xie; Baohong Zhang; Edward J. Perkins (Comput. Biol. Chem., 2010)

QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing. - Shanrong Zhao; William Gordon; Sarah Du; Chi Zhang; Wen He; Li Xi; Sachin Mathur; Michael Agostino; Theresa Paradis; David von Schack; Michael Vincent; Baohong Zhang (BMC Bioinform., 2017)

canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit. - Baohong Zhang; Shanrong Zhao; Isaac Neuhaus (Bioinform., 2018)

CHOmics: A web-based tool for multi-omics data analysis and interactive visualization in CHO cell lines. - Dongdong Lin; Hima B. Yalamanchili; Xinmin Zhang; Nathan E. Lewis; Christina S. Alves; Joost Groot; Johnny Arnsdorf; Sara P. Bjørn; Tune Wulff; Bjørn G. Voldborg; Yizhou Zhou; Baohong Zhang (PLoS Comput. Biol., 2020)

Quickomics: exploring omics data in an intuitive, interactive and informative manner. - Benbo Gao; Jing Zhu; Soumya Negi; Xinmin Zhang; Stefka Gyoneva; Fergal Casey; Ru Wei; Baohong Zhang (Bioinform., 2021)

Computational Tools and Resources for CRISPR/Cas Genome Editing. - Chao Li; Wen Chu; Rafaqat Ali Gill; Shifei Sang; Yuqin Shi; Xuezhi Hu; Yuting Yang; Qamar U. Zaman; Baohong Zhang (Genom. Proteom. Bioinform., 2023)