DeFuseDTI: Interpretable drug target interaction prediction model with dual-branch encoder and multiview fusion. - Baoming Feng; Yuan-Yuan Zhang 008; Niu-Wang-Jie Niu; Hao-Yu Zheng; Jin-Long Wang; Wen-Feng Feng (Future Gener. Comput. Syst., 2024)

MolLoG: A Molecular Level Interpretability Model Bridging Local to Global for Predicting Drug Target Interactions. - Baoming Feng; Yuan-Yuan Zhang 008; Xiao-Chen Zhou; Jin-Long Wang; Yinfei Feng (J. Chem. Inf. Model., 2024)

A substructure-aware graph neural network incorporating relation features for drug-drug interaction prediction. - Liangcheng Dong; Baoming Feng; Zengqian Deng; Jinlong Wang; Peihao Ni; Yuanyuan Zhang (Quant. Biol., 2024)

scSFCL:Deep clustering of scRNA-seq data with subspace feature confidence learning. - Xiaokun Meng; Yuanyuan Zhang 008; Xiaoyu Xu; Kaihao Zhang; Baoming Feng (Comput. Biol. Chem., 2025)