StrainMake: reproducible hybrid metagenomics with MAG recovery and strain-level resolution. - Baptiste Hennecart; Eugeni Belda; Raynald de Lahondès; Jean-Daniel Zucker; Edi Prifti (Bioinform., 2026)

MetagenBERT: a Transformer-based Architecture using Foundational genomic Large Language Models for novel Metagenome Representation. - Gaspar Roy; Eugeni Belda; Baptiste Hennecart; Yann Chevaleyre; Edi Prifti; Jean-Daniel Zucker (CoRR, 2026)