The Unconventionality of Nature: Biology, from Noise to Functional Randomness. - Barbara Bravi; Giuseppe Longo (UCNC, 2015)

Direct coupling analysis of epistasis in allosteric materials. - Barbara Bravi; Riccardo Ravasio; Carolina Brito; Matthieu Wyart (PLoS Comput. Biol., 2020)

Probing T-cell response by sequence-based probabilistic modeling. - Barbara Bravi; Vinod P. Balachandran; Benjamin D. Greenbaum; Aleksandra M. Walczak; Thierry Mora; Rémi Monasson; Simona Cocco (PLoS Comput. Biol., 2021)

Computational design of target-specific linear peptide binders with TransformerBeta. - Haowen Zhao; Francesco A. Aprile; Barbara Bravi (MLCB, 2024)

Wavelet-Based Density Estimation for Persistent Homology. - Konstantin Häberle; Barbara Bravi; Anthea Monod (SIAM/ASA J. Uncertain. Quantification, 2024)

The unbearable lightness of Restricted Boltzmann Machines: Theoretical Insights and Biological Applications. - Giovanni di Sarra; Barbara Bravi; Yasser Roudi (CoRR, 2025)