Facilitating networks of information. - Erik M. van Mulligen; Mario Diwersy; Martin Schmidt; Henk Buurman; Barend Mons (AMIA, 2000)

Architecture for Information Mediation. - Erik M. van Mulligen; Barend Mons; Martin Schmidt; Mario Diwersy; Achim Domma (MedInfo, 2001)

Research for research: tools for knowledge discovery and visualization. - Erik M. van Mulligen; C. Christiaan van der Eijk; Jan A. Kors; Bob J. A. Schijvenaars; Barend Mons (AMIA, 2002)

Mining Microarray Datasets Aided by Knowledge Stored in Literature. - Rob Jelier; Guido Jenster; Lambert C. J. Dorssers; Erik M. van Mulligen; Barend Mons; Jan A. Kors (AMIA, 2003)

Using Contextual Queries. - Bob J. A. Schijvenaars; Erik M. van Mulligen; Mario Diwersy; Marc Weeber; C. Christiaan van der Eijk; Rob Jelier; Jan A. Kors; Barend Mons (AMIA, 2003)

Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection. - Marc Weeber; Bob J. A. Schijvenaars; Erik M. van Mulligen; Barend Mons; Rob Jelier; C. Christiaan van der Eijk; Jan A. Kors (AMIA, 2003)

Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. - Rob Jelier; Martijn J. Schuemie; C. Christiaan van der Eijk; Marc Weeber; Erik M. van Mulligen; Bob J. A. Schijvenaars; Barend Mons; Jan A. Kors (TREC, 2003)

Contextual Annotation of Web Pages for Interactive Browsing. - Erik M. van Mulligen; Mario Diwersy; Bob J. A. Schijvenaars; Marc Weeber; C. Christiaan van der Eijk; Rob Jelier; Martijn J. Schuemie; Jan A. Kors; Barend Mons (MedInfo, 2004)

Distribution of information in biomedical abstracts and full-text publications. - Martijn J. Schuemie; Marc Weeber; Bob J. A. Schijvenaars; Erik M. van Mulligen; C. Christiaan van der Eijk; Rob Jelier; Barend Mons; Jan A. Kors (Bioinform., 2004)

Constructing an associative concept space for literature-based discovery. - C. Christiaan van der Eijk; Erik M. van Mulligen; Jan A. Kors; Barend Mons; Jan van den Berg (J. Assoc. Inf. Sci. Technol., 2004)

TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. - Bob J. A. Schijvenaars; Martijn J. Schuemie; Erik M. van Mulligen; Marc Weeber; Rob Jelier; Barend Mons; Jan A. Kors; Wessel Kraaij (TREC, 2005)

Online tools to support literature-based discovery in the life sciences. - Marc Weeber; Jan A. Kors; Barend Mons (Briefings Bioinform., 2005)

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. - Rob Jelier; Guido Jenster; Lambert C. J. Dorssers; C. Christiaan van der Eijk; Erik M. van Mulligen; Barend Mons; Jan A. Kors (Bioinform., 2005)

Which gene did you mean? - Barend Mons (BMC Bioinform., 2005)

Thesaurus-based disambiguation of gene symbols. - Bob J. A. Schijvenaars; Barend Mons; Marc Weeber; Martijn J. Schuemie; Erik M. van Mulligen; Hester M. Wain; Jan A. Kors (BMC Bioinform., 2005)

Word Sense Disambiguation in the Biomedical Domain: An Overview. - Martijn J. Schuemie; Jan A. Kors; Barend Mons (J. Comput. Biol., 2005)

An Online Ontology: WiktionaryZ. - Erik M. van Mulligen; Erik Möller; Peter-Jan Roes; Marc Weeber; Gerard Meijssen; Barend Mons (KR-MED, 2006)

Databases for knowledge discovery: Examples from biomedicine and health care. - Jan H. van Bemmel; Erik M. van Mulligen; Barend Mons; Mark A. van Wijk; Jan A. Kors; Johan van der Lei (Int. J. Medical Informatics, 2006)

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation. - Rob Jelier; Guido Jenster; Lambert C. J. Dorssers; Bas J. Wouters; Peter J. M. Hendriksen; Barend Mons; Ruud Delwel; Jan A. Kors (BMC Bioinform., 2007)

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. - Martijn J. Schuemie; Barend Mons; Marc Weeber; Jan A. Kors (J. Biomed. Informatics, 2007)

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. - Rob Jelier; Peter A. C. 't Hoen; Ellen Sterrenburg; Johan T. den Dunnen; Gert-Jan B. van Ommen; Jan A. Kors; Barend Mons (BMC Bioinform., 2008)

Import of ENZYME Data into the ConceptWiki and its Representation as RDF. - Paul Boekschoten; Kees Burger; Barend Mons; Christine Chichester (SWAT4LS, 2010)

Supporting nanopublication provenance: PMID2DOI converter. - Christine Chichester; Kees Burger; Hailiang Mei; Barend Mons (SWAT4LS, 2011)

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications. - Andrew P. Gibson; Jesse C. J. van Dam; Erik A. Schultes; Marco Roos; Barend Mons (SWAT4LS, 2012)

Theoretical And Technological Building Blocks For An Innovation Accelerator - Frank van Harmelen; George Kampis; Katy Börner; Peter van den Besselaar; Erik A. Schultes; Carole A. Goble; Paul Groth; Barend Mons; Stuart Anderson; Stefan Decker; Conor Hayes; Thierry Buecheler; et al. (CoRR, 2012)

Data Publishing Using Nanopublications. - Mark Thompson 002; Erik A. Schultes; Marco Roos; Barend Mons (Adv. Math. Commun., 2012)

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. - Marco Roos; Alasdair J. G. Gray; Andra Waagmeester; Mark Thompson 002; Rajaram Kaliyaperumal; Eelke van der Horst; Barend Mons; Mark D. Wilkinson (SWAT4LS, 2014)

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. - Marco Masseroli; Barend Mons; Erik Bongcam-Rudloff; Stefano Ceri; Alexander E. Kel; François Rechenmann; Frédérique Lisacek; Paolo Romano 001 (BMC Bioinform., 2014)

Explain your data by Concept Profile Analysis Web Services. - Kristina M. Hettne; Reinout van Schouwen; Eleni Mina; Eelke van der Horst; Mark Thompson 002; Rajaram Kaliyaperumal; Barend Mons; Erik M. van Mulligen; Jan A. Kors; Marco Roos (F1000Research, 2014)

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression. - Christine Chichester; Pascale Gaudet; Oliver Karch; Paul Groth; Lydie Lane; Amos Bairoch; Barend Mons; Antonis Loizou (J. Web Semant., 2014)

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. - Eleni Mina; Mark Thompson 002; Kristina M. Hettne; Willeke M. C. van Roon-Mom; Rajaram Kaliyaperumal; Eelke van der Horst; Katherine Wolstencroft; Barend Mons; Marco Roos (e-Science, 2015)

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. - Eelke van der Horst; Rajaram Kaliyaperumal; Zuotian Tatum; Mark Thompson 002; Erik A. Schultes; Eleni Mina; Ivo Fokkema; Johan T. den Dunnen; Marco Roos; Jeroen F. J. Laros; Barend Mons; Kristina M. Hettne; et al. (SWAT4LS, 2015)

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. - Eleni Mina; Mark Thompson 002; Rajaram Kaliyaperumal; Jun Zhao 003; Eelke van der Horst; Zuotian Tatum; Kristina M. Hettne; Erik A. Schultes; Barend Mons; Marco Roos (J. Biomed. Semant., 2015)

Converting neXtProt into Linked Data and nanopublications. - Christine Chichester; Oliver Karch; Pascale Gaudet; Lydie Lane; Barend Mons; Amos Bairoch (Semantic Web, 2015)

Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles. - Mark Thompson 002; Luiz Olavo Bonino da Silva Santos; Kees Burger; Rajaram Kaliyaperumal; Erik A. Schultes; Annika Jacobsen; Claudio Carta; Richard Finkers; David van Enckevort; Mascha Jansen; Barend Mons; Marco Roos (SWAT4LS, 2017)

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. - Barend Mons; Cameron Neylon; Jan Velterop; Michel Dumontier; Luiz Olavo Bonino da Silva Santos; Mark D. Wilkinson (Inf. Serv. Use, 2017)

Ready, Set, GO FAIR: Accelerating Convergence to an Internet of FAIR Data and Services. - Erik A. Schultes; George O. Strawn; Barend Mons (DAMDID/RCDL, 2018)

Bioinformatics in the Netherlands: the value of a nationwide community. - Celia W. G. van Gelder; Rob W. W. Hooft; Merlijn N. van Rijswijk; Linda van den Berg; Ruben G. Kok; Marcel J. T. Reinders; Barend Mons; Jaap Heringa (Briefings Bioinform., 2019)

A Journal for Human and Machine. - James A. Hendler; Ying Ding 001; Barend Mons (Data Intell., 2019)

FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services. - Barend Mons (Data Intell., 2019)

FAIR Data Management to Access Patient Data. - Núria Queralt Rosinach; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Henk Jan van der Wijk; Barend Mons; Marco Roos (DaMaLOS, 2020)

FAIR Principles: Interpretations and Implementation Considerations. - Annika Jacobsen; Ricardo de Miranda Azevedo; Nick S. Juty; Dominique Batista; Simon J. Coles; Ronald Cornet; Mélanie Courtot; Mercè Crosas; Michel Dumontier; Chris T. A. Evelo; Carole A. Goble; Giancarlo Guizzardi; et al. (Data Intell., 2020)

A Generic Workflow for the Data FAIRification Process. - Annika Jacobsen; Rajaram Kaliyaperumal; Luiz Olavo Bonino da Silva Santos; Barend Mons; Erik Schultes; Marco Roos; Mark Thompson 002 (Data Intell., 2020)

The FAIR Principles: First Generation Implementation Choices and Challenges. - Barend Mons; Erik Schultes; Fenghong Liu 002; Annika Jacobsen (Data Intell., 2020)

Towards the Tipping Point for FAIR Implementation. - Mirjam van Reisen; Mia Stokmans; Mariam Basajja; Antony Otieno Ong'ayo; Christine R. Kirkpatrick; Barend Mons (Data Intell., 2020)

Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) - "EOSC is a bigger ME" and the Dunning Kruger effect. - Barend Mons (Data Intell., 2021)

The Use of Foundational Ontologies in Bioinformatics. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Annika Jacobsen; Barend Mons; Marco Roos (SWAT4HCLS, 2022)

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic. - Núria Queralt-Rosinach; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Simone A. Joosten; Henk Jan van der Wijk; Erik Flikkenschild; Kees Burger; Annika Jacobsen; Barend Mons; Marco Roos (J. Biomed. Semant., 2022)

Playing catch-up in building an open research commons. - Philip E. Bourne; Vivien Bonazzi; Amy Brand; Bonnie Carroll; Ian T. Foster; Ramanathan V. Guha; Robert J. Hanisch; Sallie Ann Keller; Mary Lee Kennedy; Christine R. Kirkpatrick; Barend Mons; Sarah M. Nusser; et al. (CoRR, 2022)

Introduction to the Special Issue: Data Intelligence on Patient Health Records. - Mirjam van Reisen; Barend Mons (Data Intell., 2022)

FAIR Digital Twins for Data-Intensive Research. - Erik Schultes; Marco Roos; Luiz Olavo Bonino da Silva Santos; Giancarlo Guizzardi; Jildau Bouwman; Thomas Hankemeier; Arie Baak; Barend Mons (Frontiers Big Data, 2022)

A goal-oriented method for FAIRification planning. - César Henrique Bernabé; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (ER (Companion), 2023)

The use of foundational ontologies in biomedical research. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Barend Mons; Annika Jacobsen; Marco Roos (J. Biomed. Semant., 2023)

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. - Yu-Ning Huang; Michael I. Love; Cynthia Flaire Ronkowski; Dhrithi Deshpande; Lynn M. Schriml; Annie Wong-Beringer; Barend Mons; Russell Corbett-Detig; Christopher I Hunter; Jason H. Moore; Lana X. Garmire; T. B. K. Reddy; et al. (CoRR, 2024)

Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution. - César Henrique Bernabé; Lieze Thielemans; Rajaram Kaliyaperumal; Claudio Carta; Shuxin Zhang; Celia W. G. van Gelder; Nirupama Benis; Luiz Olavo Bonino da Silva Santos; Ronald Cornet; Bruna dos Santos Vieira; Nawel Lalout; Inês Henriques; et al. (Data Intell., 2024)

Operationalizing and digitizing person-centered daily functioning: a case for functionomics. - Esther R. C. Janssen; Ilona M. Punt; Johan van Soest; Yvonne F. Heerkens; Hillegonda A. Stallinga; Huib ten Napel; Lodewijk W. van Rhijn; Barend Mons; Andre Dekker; Paul C. Willems; Nico L. U. van Meeteren (BMC Medical Informatics Decis. Mak., 2024)

Restructuring Knowledge Graphs with Conceptual Models: Implications for Machine Learning Predictions in Drug Repurposing. - César Bernabé; Rosa Zwart; Pablo Perdomo-Quinteiro; Annika Jacobsen; Tiago Prince Sales; Núria Queralt-Rosinach; Katherine Wolstencroft; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (CAiSE (2), 2025)

GO-Plan: A goal-oriented method for FAIRification planning. - César Bernabé; Isadora Valle Sousa; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Vítor E. Silva Souza; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (Inf. Serv. Use, 2025)

The FAIR data point populator: collaborative FAIRification and population of FAIR data points. - Daphne Wijnbergen; Rajaram Kaliyaperumal; Kees Burger; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos; Eleni Mina (BMC Medical Informatics Decis. Mak., 2025)