A probabilistic method for identifying start codons in bacterial genomes. - Baris E. Suzek; Maria D. Ermolaeva; Mark J. Schreiber; Steven Salzberg (Bioinform., 2001)

The Protein Information Resource: an integrated public resource of functional annotation of proteins. - Cathy H. Wu; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Robert S. Ledley; Kali C. Lewis; Hans-Werner Mewes; Bruce C. Orcutt; Baris E. Suzek; Akira Tsugita; et al. (Nucleic Acids Res., 2002)

The Protein Information Resource. - Cathy H. Wu; Lai-Su L. Yeh; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Panagiotis Kourtesis; Robert S. Ledley; Baris E. Suzek; Cholanayakanahalli R. Vinayaka; Jian Zhang 051; et al. (Nucleic Acids Res., 2003)

The PIR integrated protein databases and data retrieval system. - Hongzhan Huang; Zhang-Zhi Hu; Baris E. Suzek; Cathy H. Wu (Data Sci. J., 2004)

PIRSF: family classification system at the Protein Information Resource. - Cathy H. Wu; Anastasia N. Nikolskaya; Hongzhan Huang; Lai-Su L. Yeh; Darren A. Natale; Cholanayakanahalli R. Vinayaka; Zhang-Zhi Hu; Raja Mazumder; Sandeep Kumar; Panagiotis Kourtesis; Robert S. Ledley; Baris E. Suzek; et al. (Nucleic Acids Res., 2004)

The Universal Protein Resource (UniProt): an expanding universe of protein information. - Cathy H. Wu; Rolf Apweiler; Amos Bairoch; Darren A. Natale; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; et al. (Nucleic Acids Res., 2006)

UniRef: comprehensive and non-redundant UniProt reference clusters. - Baris E. Suzek; Hongzhan Huang; Peter B. McGarvey; Raja Mazumder; Cathy H. Wu (Bioinform., 2007)

Orchestrating caGrid Services in Taverna. - Wei Tan 001; Ravi K. Madduri; Kiran Keshav; Baris E. Suzek; Scott Oster; Ian T. Foster (ICWS, 2008)

Infrastructure for the life sciences: design and implementation of the UniProt website. - Eric Jain; Amos Bairoch; Severine Duvaud; Isabelle Phan; Nicole Redaschi; Baris E. Suzek; Maria Jesus Martin; Peter B. McGarvey; Elisabeth Gasteiger (BMC Bioinform., 2009)

A comprehensive protein-centric ID mapping service for molecular data integration. - Hongzhan Huang; Peter B. McGarvey; Baris E. Suzek; Raja Mazumder; Jian Zhang 051; Yongxing Chen; Cathy H. Wu (Bioinform., 2011)

Life sciences domain analysis model. - Robert R. Freimuth; Elaine T. Freund; Lisa Schick; Mukesh K. Sharma; Grace A. Stafford; Baris E. Suzek; Joyce Hernandez; Jason Hipp; Jenny M. Kelley; Konrad Rokicki; Sue Pan; Andrew J. Buckler; et al. (J. Am. Medical Informatics Assoc., 2012)

Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries. - Peter B. McGarvey; Sweta Ladwa; Mauricio Oberti; Anca Dana Dragomir; Erin K. Hedlund; David M. Tanenbaum; Baris E. Suzek; Subha Madhavan (J. Am. Medical Informatics Assoc., 2012)

In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases. - Peter B. McGarvey; Baris E. Suzek; Shruti Rao; Subha Madhavan; James N. Baraniuk; Samir Lababidi; Andrea Sutherland; Richard Forshee (BCB, 2013)

A fast Peptide Match service for UniProt Knowledgebase. - Chuming Chen; Zhiwen Li; Hongzhan Huang; Baris E. Suzek; Cathy H. Wu (Bioinform., 2013)

Erratum to: Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. - Andrew J. Buckler; Tiffany Ting Liu; Erica S. Savig; Baris E. Suzek; Daniel L. Rubin; David Paik (J. Digit. Imaging, 2013)

Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. - Andrew J. Buckler; Matt Ouellette; Jovanna Danagoulian; Gary Wernsing; Tiffany Ting Liu; Erica S. Savig; Baris E. Suzek; Daniel L. Rubin; David Paik (J. Digit. Imaging, 2013)

A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers. - Andrew J. Buckler; David Paik; Matt Ouellette; Jovanna Danagoulian; Gary Wernsing; Baris E. Suzek (J. Digit. Imaging, 2013)

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. - Baris E. Suzek; Yuqi Wang; Hongzhan Huang; Peter B. McGarvey; Cathy H. Wu (Bioinform., 2015)

ProSetComp: A Platform for Protein Set Comparisons. - Erdem Turk; Turkan Arit; Delikanli Mertcan Susus; Ilayda Ucar; Baris E. Suzek (BCB, 2018)