Steered Molecular Dynamics. - Sergei Izrailev; Sergey B. Stepaniants; Barry Isralewitz; Dorina Kosztin; Hui Lu; Ferenc Molnár; Willy Wriggers; Klaus Schulten (Computational Molecular Dynamics, 1999)

GPU Algorithms for Molecular Modeling. - John E. Stone; David J. Hardy; Barry Isralewitz; Klaus Schulten (Scientific Computing with Multicore and Accelerators, 2010)

Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing. - John E. Stone; Melih Sener; Kirby L. Vandivort; Angela M. Barragan; Abhishek Singharoy; Ivan Teo; João V. Ribeiro 003; Barry Isralewitz; Bo Liu; Boon Chong Goh; James C. Phillips; Craig MacGregor-Chatwin; et al. (Parallel Comput., 2016)

Lessons Learned from Responsive Molecular Dynamics Studies of the COVID-19 Virus. - David J. Hardy; John E. Stone; Barry Isralewitz; Emad Tajkhorshid (UrgentHPC@SC, 2021)

Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales. - Melih Sener; Stuart Levy; John E. Stone; A. J. Christensen 001; Barry Isralewitz; Robert Patterson; Kalina Borkiewicz; Jeffrey Carpenter; C. Neil Hunter; Zaida Luthey-Schulten; Donna J. Cox (Parallel Comput., 2021)

Cybershuttle: An End-to-End Cyberinfrastructure Continuum to Accelerate Discovery in Science and Engineering. - Suresh Marru; Marlon E. Pierce; Beth Plale; Sudhakar Pamidighantam; Dimuthu Wannipurage; Marcus Christie; Isuru Ranawaka; Eroma Abeysinghe; Rob Quick; Emad Tajkhorshid; Seid Koric; Jim Basney; et al. (PEARC, 2023)